Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq888 381 7e-101 >seq888 Length=1579 Score = 381 bits (422), Expect = 7e-101 Identities = 498/689 (72%), Gaps = 0/689 (0%) Strand=Plus/Minus Query 167624 ATAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATCCGTCCTTACAAT 167683 || |||||||||||||| |||||||| || | |||| || ||||| ||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 167684 GCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTC 167743 || ||||| || || | ||| |||||||| || || ||||| || || || || || || Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 167744 GGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTA 167803 |||||||| | |||||||||||||| || || ||||| || | || || | || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 167804 CTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCT 167863 || ||| | || || ||||| |||||||| || |||| ||||| |||||||| || ||| Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 167864 GGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTG 167923 || | || || | ||| | |||| |||||| || |||| |||||||| || || || Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 167924 TATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAA 167983 | ||||||||||| ||||||| ||| || ||| | | || || | || || Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 167984 ACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGC 168043 ||||| || ||||| || |||||||| |||||||| || ||||| ||| | || ||| Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 168044 AATAAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGT 168103 || ||||||||| | |||||||| ||||||||||| ||||| | ||| | |||| Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTCA 1096 Query 168104 TCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAA 168163 | ||||| | | || | ||| ||| || ||||| || || || || || || || Sbjct 1095 GCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGAG 1036 Query 168164 GTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAAT 168223 | | || || || ||||| ||||||||||| ||||| || || || || || || || Sbjct 1035 ATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTAAC 976 Query 168224 GAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCA 168283 ||||| | ||||| |||||||| | ||| || |||||||||||| |||||||||| Sbjct 975 GAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCCT 916 Query 168284 GAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||| | ||| | || |||||||| Sbjct 915 GAGGAGGTACTTCCACGTGGAAACGCTCT 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567167151201600