Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq8698 161 1e-34 >seq8698 Length=1787 Score = 161 bits (178), Expect = 1e-34 Identities = 397/593 (67%), Gaps = 12/593 (2%) Strand=Plus/Plus Query 93080 TTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTG 93139 ||||| | |||||| || || || ||| |||||||| || ||||| ||||| || || Sbjct 1192 TTGTATAATAAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTT 1251 Query 93140 CTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA 93199 || ||||||||| | || || ||||| || | |||||| | | | || | Sbjct 1252 GAAAAACATAAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAA 1311 Query 93200 CCAGaaaaaaaTATACCTTC-CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 ||| || || |||||||| |||| | || ||||| || | || || || || ||| Sbjct 1312 CCACTGAAGAAGATACCTTCACACG-CAGCGAATGCAACGACGCGCTCTGCGAACGATGC 1370 Query 93259 GGAATTACTGC--TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGT 93316 | | |||| || |||| || ||| || ||||||| || | | | | Sbjct 1371 GTTGT--CTGCGTTGGTCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCGATT 1428 Query 93317 GTTTCGATAGCGTTAAATAG--GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGA 93374 || || ||||| || || | | | | || | || || || ||||| || || | Sbjct 1429 GTATCAATAGCATTCAACAAACGCGTTTTTTCTGGACC--ATTACGAATGTAAGTGTCTA 1486 Query 93375 TTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAAC 93434 |||||| ||||||| ||| | ||| | ||| || || || ||||| || || ||||||| Sbjct 1487 TTAACAAGGAATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAAC 1546 Query 93435 ATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC-TCTACGAGATTTTCATTGACT 93493 | | ||||| | | |||||||| | ||||| || || || | |||||| || || Sbjct 1547 AACGTGCTTCAGGCACTTGCACTTCGTTGGAAAAGTTCATCAACAA-ATTTTCGTTTACA 1605 Query 93494 ATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCT 93553 ||||| |||||||| || ||||| ||||||| | | || || | || | ||| Sbjct 1606 ATACCGTCGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCG 1665 Query 93554 TTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAAC 93613 | | ||||||||||| ||||| || | || | ||||| ||||||| || Sbjct 1666 CTCATTTTATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAA 1725 Query 93614 GATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAA 93666 |||||||| |||||||| ||||| | ||| || || | || ||||||||| || Sbjct 1726 GATGCTTCAGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAA 1778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556797136889040