Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq810 123 2e-23 seq4707 109 5e-19 seq6389 96.9 3e-15 seq775 95.1 1e-14 seq1282 84.2 2e-11 >seq810 Length=26514 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| || ||||| |||| || |||||||| ||| | || ||||| Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | ||||||||||| ||| ||||||||||| |||| |||||| Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111364 ||| | ||||| | ||| || ||||||||||||||| | | ||| | || || | Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAG--TGACTACA 7693 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||||||||| | || |||||||||| || ||||| || || || Sbjct 7694 ACATCCAAAAAGAAGCAACTTTACATTTAGTATTACGTCTTCGTGGAGG 7742 >seq4707 Length=625 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 111259 CAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATT 111318 ||||| || ||||| || ||||||||||| |||| ||||||||| | ||||| Sbjct 248 CAGGTCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATC 307 Query 111319 TATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAA 111378 | ||| || ||||||||||||||| ||| | | ||||||||||| ||||||||| Sbjct 308 TTTGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAA 367 Query 111379 TCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || || |||||||| |||||| | || ||||| Sbjct 368 GCAACCCTTCATTTAGTATTGCGTTTACGTGGTGG 402 >seq6389 Length=961 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 111198 TGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGCGATTCTGTTGG 111257 ||| ||||| | || || ||||| ||||| | || || || | |||||| | || Sbjct 228 TGTAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCATTTC 169 Query 111258 CCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTAT 111317 | || |||||||| || || |||||||| |||| || |||||| | | || Sbjct 168 GCGTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGAT 109 Query 111318 TTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGA 111377 | || || |||||||| |||||| || | || ||||||||||| |||||||| Sbjct 108 ATTCGCAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAAGA 49 Query 111378 ATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||| | |||||||| |||||| | || ||||| Sbjct 48 ATCTACGTTGCATTTAGTTTTGCGTTTACGTGGTGG 13 >seq775 Length=28483 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 111181 TTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAA 111240 |||| ||||||||||| || ||||| |||| || |||||||| || | || ||| Sbjct 10458 TTAATCATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAA 10517 Query 111241 CCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTC 111300 || ||| || ||| | || |||||||| || ||||||||||| |||| Sbjct 10518 CCATCTGATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCA 10577 Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT 111342 ||||||||| | ||||| | ||| || ||||||||||||||| Sbjct 10578 GATCAACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGAT 10619 >seq1282 Length=23488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGA--ACCCA 111244 |||||| | ||||| |||||| |||| || ||||| || || |||| || | || | Sbjct 1073 ATGCAATTCTTTGTTAAAACGTTGACTGGTAAAACAATCACTTTGGA--CGTATTACAAA 1130 Query 111245 GCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATC 111304 || | ||| | |||||| ||| ||| | |||||||| ||| |||| Sbjct 1131 ATGAATTGATTGCAGATGTAAAATTAAAGATTCAAAAGAAAGAAGGATGTCCACCAGATC 1190 Query 111305 AACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 111364 ||||| | |||||| ||| || | |||||||||||| | || | ||||||| | Sbjct 1191 AACAACGAATTATTTTTGCAGGTTATCAATTGGAAGATACGCGTACATTATCCGATTACA 1250 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||||||||| |||| | |||||||| || || || || || || Sbjct 1251 ACATTCAAAAAGAAGCTACCGTCCATTTAGTATTACGACTTCGTGGAGG 1299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422992845053200