Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq810 154 3e-32 seq2286 147 4e-30 seq6389 113 8e-20 seq4707 109 1e-18 seq1642 105 1e-17 seq775 102 2e-16 seq2305 86.0 1e-11 seq734 86.0 1e-11 >seq810 Length=26514 Score = 154 bits (170), Expect = 3e-32 Identities = 178/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || ||||| || |||| || | |||||||||||||| || || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| || || || || || || || || | |||||| || |||||| Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||||||| || ||| || || || || | || |||||| Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTATA 68473 || | |||||||||||| || || | || || ||||| || ||||| ||| |||||| Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATGATG--ATTATA 7506 >seq2286 Length=9169 Score = 147 bits (162), Expect = 4e-30 Identities = 326/484 (67%), Gaps = 4/484 (1%) Strand=Plus/Minus Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306 || |||||| |||||| || | ||||| || ||||| ||||| || |||||||| Sbjct 3713 TGAAGCATTAACCACATGGCATATACATATTCTTTTGCATGTCCCCAGTCCCGCTTTGCA 3654 Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGA 268366 |||| || || || || ||| || |||||| || | | || | | | | Sbjct 3653 TCCAAATTTCCCAGTGTCAAAGTTTTTTGGTTGCCGCATTTAATGTTAGCCACAGCTCTT 3594 Query 268367 GTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATG 268426 || ||||| || || ||||| | | |||||| |||| || |||||||| || || ||| Sbjct 3593 GTAATTTTACGAGTGACGAAAGCCAGTCCACGTCGAGGACTTTCGTGGTTAAACAGTATG 3534 Query 268427 CCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAAC 268486 || |||| | ||| ||||| ||||| || ||||| || || |||| || ||| | Sbjct 3533 CCATTGCTTAAGTGCATTCCATAAGCCTCCCGATAGTTGACAACTATCCAATAAGCATAT 3474 Query 268487 ATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATT 268546 || ||||| |||||||| || | ||| | ||| || || || ||||| || || Sbjct 3473 TGTTTAGCAACAGCGTACGGTGATCTTGGGTAGAACGGTGTGGTCTCTTTTTGGGGCGTT 3414 Query 268547 TCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTT-C 268605 ||| | ||||| || || ||||| || |||||||| || || |||| | | | | Sbjct 3413 TCTTGCACTTTTCCGAATAGCTCACTCGTGGATGCTTGATAAAA-TTTGCAGCTATCGGC 3355 Query 268606 GAGACC-GCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCG 268664 | | ||| || || ||||| | | || || || || || || | || |||| | Sbjct 3354 AATATTTGCA-ATACGTATTGCGTTTAATAACCGTAGTGTACCAATTGCGTCTACGTTTG 3296 Query 268665 CTGTATACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAA 268724 |||||||| |||| |||||| || || | || || || || || || | ||||||| Sbjct 3295 AAGTATACTCAGGCAACTCGAACGAGACTTTAACGTGACTTTGCGCACCTAAATTATAAA 3236 Query 268725 CCTC 268728 |||| Sbjct 3235 CCTC 3232 >seq6389 Length=961 Score = 113 bits (124), Expect = 8e-20 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| || || || | ||| || |||||||| || |||||||| | | ||| | ||| Sbjct 25 CGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCA 84 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 |||||||| || || || |||||||| | || ||||||||| |||||||| ||||| || Sbjct 85 TCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTA 144 Query 68367 TCTTGAATCTTT 68378 ||||| |||||| Sbjct 145 TCTTGGATCTTT 156 >seq4707 Length=625 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||||||| || || || || | ||||||||||| |||||||| || || || | ||| Sbjct 390 CGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGTCCA 331 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || || || || || || || || | |||||| || || ||||| ||||| ||| Sbjct 330 TCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCTTTG 271 Query 68367 TCTTGAATCTTTGCCTTGAC 68386 ||||| |||||| |||||| Sbjct 270 TCTTGGATCTTTTGCTTGAC 251 >seq1642 Length=12514 Score = 105 bits (116), Expect = 1e-17 Identities = 234/349 (67%), Gaps = 8/349 (2%) Strand=Plus/Minus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| || ||| |||||| ||||| ||||| || ||||| |||||||| ||||| | Sbjct 2128 CTGTAGAATTAGCCACATAGCTTCCACATAATCTTTAGCATGCCCCCAATCTCGCTTCGA 2069 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGC----TTCACGCGTGCAAGAC 268361 || || || || || ||| || | | ||||| | || | | |||| Sbjct 2068 ATCTATATTACCTAGATACA---ATGTAT-CTTGCAAATTACATTTGATTCTAGCAACTG 2013 Query 268362 CGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGA 268421 | | ||| |||||||| || |||||||| | || | | | ||||| || ||||| || | Sbjct 2012 CTCTAGTAATTTTTCGCGTGACGAACGTAGCCCCTCTTCGTGGGCTTTCATGGTTAAATA 1953 Query 268422 GGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATG 268481 || || || | |||||| || || || | ||||| || | | ||||| ||| Sbjct 1952 AAATCCCATTAGAAAGATGCATGCCGTACGCTTCTCTATAGTTTACAAGCATCCAGAATG 1893 Query 268482 CAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAG 268541 |||| ||||||||||| || || || ||||||| || || || || | || | Sbjct 1892 CAAATTGTTTTGCAACTGCATATGGTGACCGTGGATAAAAAGGGGTTGTTTCCGACTGTG 1833 Query 268542 GGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAA 268590 | | ||| || ||||| ||||| ||||| ||| |||||||| || || Sbjct 1832 GCACTTCGCGAACTTTCCCAAACAGCTCACTGGTAGATGCTTGATACAA 1784 >seq775 Length=28483 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| || || || || || || || || | |||||| || |||||||| ||||| Sbjct 10621 CCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCT 10562 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| |||||| || ||| || || || || | || |||||| || | ||| Sbjct 10561 TTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTG 10502 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 |||||||| || || | || || ||||| || ||||| || Sbjct 10501 ATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATGAT 10461 >seq2305 Length=8964 Score = 86.0 bits (94), Expect = 1e-11 Identities = 124/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 |||||||| || || || || ||||| | ||||||||| || || || || || ||| Sbjct 1508 TCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAAT 1449 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || | | |||||| || ||||| || ||||| || ||||| || ||| || ||| Sbjct 1448 ATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTT 1389 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 || || || || | | |||||| || | ||||||||||| || || | |||| Sbjct 1388 TCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGTTTTCCCAGTCAATGTCT 1334 >seq734 Length=33368 Score = 86.0 bits (94), Expect = 1e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || | || ||||| || || | || || | ||| || ||||||||||| Sbjct 10541 CCTCCACGCAAACGTAATACTAAATGCAATACGGCTTCCTCTTGTATATTATAATCGGAT 10482 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||||| ||||| || || ||||| | | |||||| || |||||| Sbjct 10481 AATGTACGACCATCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTGGA 10422 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || ||||| || ||| || || || || |||| ||| || Sbjct 10421 ATACCTTCTTTATCTTGTATTTTTAATTTTGTATTTTCAATTGTATCTGTTGAAGGAACA 10362 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATC 68456 | ||||||||||| || || | ||| || || |||||| Sbjct 10361 AAAAGAGTGATGGTTTTACCAGTCAAGGTTTTTACAAATATC 10320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921517035519120