Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq810 163 2e-35 seq6389 125 6e-24 seq4707 118 9e-22 seq2305 105 6e-18 seq775 105 6e-18 seq1282 93.3 4e-14 seq3001 86.0 5e-12 >seq810 Length=26514 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || |||||||||| || | ||||||||| |||||||| || || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||||| |||||| | ||||||||| || |||| ||||| ||||| || || ||| Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||||||||| |||||||||||||| | ||||| || || | | ||| || Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | ||||| || |||| ||||||||| ||||| |||||| Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATG 7515 >seq6389 Length=961 Score = 125 bits (138), Expect = 6e-24 Identities = 120/151 (79%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| ||||||| | |||||||||||| | |||||||||||||||||| || ||||| || Sbjct 12 ACCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGC 71 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || ||||| |||||| | ||||||||| ||| | || | || |||||||| || | Sbjct 72 TAAT-GTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTG 130 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| |||||||| || ||||||||||| Sbjct 131 GAATCCCTTCTTTATCTTGGATCTTTTGTTT 161 >seq4707 Length=625 Score = 118 bits (130), Expect = 9e-22 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||||| | ||| |||||||| | || | ||||||||| || || ||||| Sbjct 405 ATACCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCA 346 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||| | |||||||||||| |||| ||||| ||||| || ||| Sbjct 345 GAAAGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGA 286 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG 114310 ||||| ||||||||||| |||||||| || | ||| Sbjct 285 GGAATTCCTTCTTTGTCTTGGATCTTTTGCTTGACCTG 248 >seq2305 Length=8964 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||||| ||| ||||||||||| | || | |||||||||||| ||||| || Sbjct 1547 ATGCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCA 1488 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || | ||||| |||||| | |||||| || || | || | ||| ||||| || || Sbjct 1487 CTAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGT 1428 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || |||||||| || || |||||||| | | ||||| || || | | ||| Sbjct 1427 GGGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCT 1368 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || || | || | ||||| || |||| Sbjct 1367 ACATCAAGCGTGATGGTTTTCCCAGTCA 1340 >seq775 Length=28483 Score = 105 bits (116), Expect = 6e-18 Identities = 125/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||||||||| || |||| ||||| ||||| || || ||||| |||||||| Sbjct 10619 ATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 10560 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||||||||| | | ||||| || || | | ||| || || | || | Sbjct 10559 GTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGAT 10500 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTAATTATT 114394 ||||| || |||| |||||||| ||||| ||||| | |||||| || Sbjct 10499 GGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT-GATTAATTGTT 10453 >seq1282 Length=23488 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 114142 ACCATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAA 114201 |||| | | | || || ||||| |||| || |||||||| | |||| ||||||||||| Sbjct 1313 ACCAATGATACATTCCTCCACGAAGTCGTAATACTAAATGGACGGTAGCTTCTTTTTGAA 1254 Query 114202 TGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCT 114261 ||||||||||| | ||||| | |||||| | ||| | ||| || | || | || | Sbjct 1253 TGTTGTAATCGGATAATGTACGCGTATCTTCCAATTGATAACCTGCAAAAATAATTCGTT 1194 Query 114262 GTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGT 114321 |||| || || ||| |||||||| | ||||||| ||||| | | ||| | Sbjct 1193 GTTGATCTGGTGGACATCCTTCTTTCTTTTGAATCTTTAATTTTACATCTGCAATCAATT 1134 Query 114322 CGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 114381 | | | ||||||| || | ||||| || |||| ||||| ||||| | |||| Sbjct 1133 CATTTTGTAATACGTCCAAAGTGATTGTTTTACCAGTCAACGTTTTAACAAAGAATTGCA 1074 Query 114382 T 114382 | Sbjct 1073 T 1073 >seq3001 Length=6688 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 114191 TTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTA 114250 |||||||| ||| |||||||| || ||| | || |||||| | |||||| ||||| Sbjct 4433 TTCTTTTTCAATATTGTAATCAGACAAAGTGCAAGTATCTTCCAATTGTTTCCCAGCAAG 4374 Query 114251 GATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTG 114310 ||| | | ||||| |||| || |||||||| || ||| | || || | | Sbjct 4373 GATTAAAATTTGTTGACTTGGAGCGATACCTTCTTTTTCTTGAATTCTCTGCTTAACATT 4314 Query 114311 TTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370 |||||| ||||| | | | | || |||| ||| ||| ||||| | | | |||| || Sbjct 4313 TTCAACAGTGTCAGACGCTACCACATCCAAGGTGGTCGTCTTGCCTCTTAAATTTTTAAC 4254 Query 114371 AAAAATCTGCAT 114382 |||||||||||| Sbjct 4253 AAAAATCTGCAT 4242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420087568931352