Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq810 143 6e-29 seq2305 138 3e-27 seq775 116 9e-21 seq1642 104 6e-17 seq4707 96.9 8e-15 seq6389 95.1 3e-14 seq2286 91.5 3e-13 >seq810 Length=26514 Score = 143 bits (158), Expect = 6e-29 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||||||| || ||||| || || ||||| ||||| |||||||| ||||| || Sbjct 7707 TTCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCATCTTCCAATTGTTTACCTGCAAA 7648 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| |||||| ||| ||||||||||| || || || || ||| ||||| Sbjct 7647 GATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTT 7588 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | |||||| || || ||||| || || || |||| ||| || || Sbjct 7587 TTCAATAGTATCAGATGGTTCTACATCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTAC 7528 Query 288462 GAATATCTGCATTATGTTATTCTAATAT 288489 ||| || ||||| ||| ||| |||||| Sbjct 7527 GAAAATTTGCATGATG--ATTATAATAT 7502 >seq2305 Length=8964 Score = 138 bits (152), Expect = 3e-27 Identities = 163/217 (75%), Gaps = 3/217 (1%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATG-AATCGTGCTTTCTTTTTGGATATTATAG 288300 |||| ||||| || | ||| | || | ||| ||| ||||| ||||||| ||||| ||| Sbjct 1548 CATG-CCACCACGTAATCTTAAAACTAAATGCAATGTTGCTT-CTTTTTGAATATTGTAG 1491 Query 288301 TCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAA 288360 || || || || || ||||| |||||||| ||||| || |||| ||| |||||| Sbjct 1490 TCACTAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCT 1431 Query 288361 TCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 |||||| ||||||||||| || ||||| ||| |||||||| |||| ||| || | Sbjct 1430 GGTGGGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGT 1371 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457 ||||| || |||||||| || ||||| |||| |||| Sbjct 1370 TCTACATCAAGCGTGATGGTTTTCCCAGTCAATGTCT 1334 >seq775 Length=28483 Score = 116 bits (128), Expect = 9e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 288313 CGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCT 288372 ||||| ||||| |||||||| ||||| ||||| ||||| |||||| ||| |||||| Sbjct 10624 CGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCT 10565 Query 288373 TCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGC 288432 ||||| || ||||| || ||| |||||||| |||| ||| | |||||| || || Sbjct 10564 TCTTTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGA 10505 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||| || || || |||| || || ||||| || ||||| || Sbjct 10504 GTGATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATGAT 10461 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||| | ||| | || |||||||||||||||||| || | || || ||||| || Sbjct 10811 AAGTACTAAATGTAAGGTTGCTTCTTTTTGGATATTATAATCAGAAAGGGTACGTCCATC 10752 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 ||| |||||||| ||||| ||||| ||||| |||||| Sbjct 10751 TTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGA 10715 >seq1642 Length=12514 Score = 104 bits (114), Expect = 6e-17 Identities = 270/404 (67%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 72432 GAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGA 72491 ||| ||| ||| ||||| | ||| | || ||| |||||| || || |||||||| || Sbjct 1805 GAGCTGTTTGGGAAAGTTCGCGAAGTGCCACAGTCGGAAACAACCCCTTTTTATCCACGG 1864 Query 72492 AGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCG 72551 || || | |||||||| | || | ||||| | ||| || | || || Sbjct 1865 TCACCATATGCAGTTGCAAAACAATTTGCATTCTGGATGCTTGTAAACTATAGAGAAGCG 1924 Query 72552 TATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCAT 72611 || |||| || | | || ||||| || || || || || || ||||| | Sbjct 1925 TACGGCATGCATCTTTCTAATGGGATTTTATTTAACCATGAAAGCCCACGAAGAGGGGCT 1984 Query 72612 CAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTG--TCGAAA 72669 |||||| || || ||||| || | | || || | || ||| || | | || Sbjct 1985 ACGTTCGTCACGCGAAAAATTACTAGAGCAGTTGCTAGAAT---CAAATGTAATTTGCAA 2041 Query 72670 AATGCAT-GTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTAC 72728 || ||| |||||| |||||||||||| | || |||||||||| |||| || ||||| Sbjct 2042 GATACATTGTATCTAGGTAATATAGATTCGAAGCGAGATTGGGGGCATGCTAAAGATTAT 2101 Query 72729 GTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACA 72788 || ||||| |||||| | || || || ||||||| |||||||| ||||| ||| || Sbjct 2102 GTGGAAGCTATGTGGCTAATTCTACAGCAAGATATCCCGGATGATTATGTATGTGCCACT 2161 Query 72789 GG-GAAA-ACA-ACGAGCGTTCGTGAGTTCGTGAAAATGGCATT 72829 || |||| || ||| || || |||||||| || |||| || Sbjct 2162 GGAGAAATGCATACG---GTACGAGAGTTCGTAGAATTGGCTTT 2202 >seq4707 Length=625 Score = 96.9 bits (106), Expect = 8e-15 Identities = 104/135 (77%), Gaps = 7/135 (5%) Strand=Plus/Minus Query 288264 TACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTC 288323 ||| | ||||| || |||||||||||||||||| || | || || ||||| ||||| Sbjct 385 TACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGTCCATCTTC 326 Query 288324 TAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATC 288380 |||||||| || || ||||| ||||| |||||| ||||| ||||||||||| || Sbjct 325 CAATTGTTTACCAGCAAAGATAAGACGTTGTTGA---TCTGGAGGAATTCCTTCTTTGTC 269 Query 288381 CTGGAT-TTTCGCTT 288394 ||||| ||| |||| Sbjct 268 TTGGATCTTTTGCTT 254 >seq6389 Length=961 Score = 95.1 bits (104), Expect = 3e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || || | || ||||| |||||||||||||| |||||||| Sbjct 48 TTCTTTTTGAATATTATAATCAGCTAATGTACGTCCATCTTCTAATTGTTTACCTGCGAA 107 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| || ||||| ||| || ||||||||||| ||||| || |||||| Sbjct 108 TATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTATCTTGGATCTTTTGTTTCAC 164 >seq2286 Length=9169 Score = 91.5 bits (100), Expect = 3e-13 Identities = 244/362 (67%), Gaps = 12/362 (3%) Strand=Plus/Plus Query 72441 GGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTAC 72500 |||||||||||||||| || || | || | || ||||| || || || || ||| Sbjct 3400 GGAAAAGTGCAAGAAACGCCCCAAAAAGAGACCACACCGTTCTACCCAAGATCACCGTAC 3459 Query 72501 GGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATG 72560 | |||||| || || ||||||||||| | || || || ||| | ||| ||| Sbjct 3460 GCTGTTGCTAAACAATATGCTTATTGGATAGTTGTCAACTATCGGGAGGCTTATGGAATG 3519 Query 72561 TATGTATGCAACTCGAT-TTGTTTCAATCACGAGAGTCC-CAACAGAGGCCATCAGTTCG 72618 | || |||| || ||||| || ||||| ||||| | || | || | |||| Sbjct 3520 CACTTAAGCAATGGCATACTGTTT-AACCACGAAAGTCCTCGAC-GTGGACTGGCTTTCG 3577 Query 72619 TGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAAT--GGTGTCGAAAAATGCAT 72676 | ||||||||||| || | | || || || | || ||| || | ||||| | Sbjct 3578 TCACTCGTAAAATTACAAGAGCTGTGGCTAACA--TTAAATGCGGCAACCAAAAAACTTT 3635 Query 72677 GTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGC 72736 | || || ||| | ||||| || | || |||||| |||| || || || ||| | || Sbjct 3636 GACACTGGGAAATTTGGATGCAAAGCGGGACTGGGGACATGCAAAAGAATATGTATATGC 3695 Query 72737 AATGTGGTTGATGCTGCAACAAGA--TACTCCGGATGACTATGTGATTGCAACAGGGAAA 72794 |||||||| ||||| |||||||| ||| | ||| |||||||| |||||| || || Sbjct 3696 CATGTGGTTAATGCTTCAACAAGAATTAC-CAGGA-GACTATGTTTGTGCAACTGGAGAA 3753 Query 72795 AC 72796 || Sbjct 3754 AC 3755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179516164410988