Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1642 104 5e-17 seq2286 91.5 3e-13 >seq1642 Length=12514 Score = 104 bits (114), Expect = 5e-17 Identities = 270/404 (67%), Gaps = 12/404 (3%) Strand=Plus/Plus Query 68421 GAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGA 68480 ||| ||| ||| ||||| | ||| | || ||| |||||| || || |||||||| || Sbjct 1805 GAGCTGTTTGGGAAAGTTCGCGAAGTGCCACAGTCGGAAACAACCCCTTTTTATCCACGG 1864 Query 68481 AGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCG 68540 || || | |||||||| | || | ||||| | ||| || | || || Sbjct 1865 TCACCATATGCAGTTGCAAAACAATTTGCATTCTGGATGCTTGTAAACTATAGAGAAGCG 1924 Query 68541 TATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCAT 68600 || |||| || | | || ||||| || || || || || || ||||| | Sbjct 1925 TACGGCATGCATCTTTCTAATGGGATTTTATTTAACCATGAAAGCCCACGAAGAGGGGCT 1984 Query 68601 CAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAATGGTG--TCGAAA 68658 |||||| || || ||||| || | | || || | || ||| || | | || Sbjct 1985 ACGTTCGTCACGCGAAAAATTACTAGAGCAGTTGCTAGAAT---CAAATGTAATTTGCAA 2041 Query 68659 AATGCAT-GTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTAC 68717 || ||| |||||| |||||||||||| | || |||||||||| |||| || ||||| Sbjct 2042 GATACATTGTATCTAGGTAATATAGATTCGAAGCGAGATTGGGGGCATGCTAAAGATTAT 2101 Query 68718 GTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACA 68777 || ||||| |||||| | || || || ||||||| |||||||| ||||| ||| || Sbjct 2102 GTGGAAGCTATGTGGCTAATTCTACAGCAAGATATCCCGGATGATTATGTATGTGCCACT 2161 Query 68778 GG-GAAA-ACA-ACGAGCGTTCGTGAGTTCGTGAAAATGGCATT 68818 || |||| || ||| || || |||||||| || |||| || Sbjct 2162 GGAGAAATGCATACG---GTACGAGAGTTCGTAGAATTGGCTTT 2202 >seq2286 Length=9169 Score = 91.5 bits (100), Expect = 3e-13 Identities = 244/362 (67%), Gaps = 12/362 (3%) Strand=Plus/Plus Query 68430 GGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTAC 68489 |||||||||||||||| || || | || | || ||||| || || || || ||| Sbjct 3400 GGAAAAGTGCAAGAAACGCCCCAAAAAGAGACCACACCGTTCTACCCAAGATCACCGTAC 3459 Query 68490 GGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATG 68549 | |||||| || || ||||||||||| | || || || ||| | ||| ||| Sbjct 3460 GCTGTTGCTAAACAATATGCTTATTGGATAGTTGTCAACTATCGGGAGGCTTATGGAATG 3519 Query 68550 TATGTATGCAACTCGAT-TTGTTTCAATCACGAGAGTCC-CAACAGAGGCCATCAGTTCG 68607 | || |||| || ||||| || ||||| ||||| | || | || | |||| Sbjct 3520 CACTTAAGCAATGGCATACTGTTT-AACCACGAAAGTCCTCGAC-GTGGACTGGCTTTCG 3577 Query 68608 TGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTCAAT--GGTGTCGAAAAATGCAT 68665 | ||||||||||| || | | || || || | || ||| || | ||||| | Sbjct 3578 TCACTCGTAAAATTACAAGAGCTGTGGCTAACA--TTAAATGCGGCAACCAAAAAACTTT 3635 Query 68666 GTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGC 68725 | || || ||| | ||||| || | || |||||| |||| || || || ||| | || Sbjct 3636 GACACTGGGAAATTTGGATGCAAAGCGGGACTGGGGACATGCAAAAGAATATGTATATGC 3695 Query 68726 AATGTGGTTGATGCTGCAACAAGA--TACTCCGGATGACTATGTGATTGCAACAGGGAAA 68783 |||||||| ||||| |||||||| ||| | ||| |||||||| |||||| || || Sbjct 3696 CATGTGGTTAATGCTTCAACAAGAATTAC-CAGGA-GACTATGTTTGTGCAACTGGAGAA 3753 Query 68784 AC 68785 || Sbjct 3754 AC 3755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102750761075100