Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq810 113 5e-20 seq769 107 2e-18 seq775 91.5 1e-13 seq6389 89.7 5e-13 seq4707 84.2 2e-11 >seq810 Length=26514 Score = 113 bits (124), Expect = 5e-20 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || | ||||||||| |||||||| || | || || | ||||| Sbjct 7724 ACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCATCTTCC 7665 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || || || || || || || |||||||||||||| ||||| Sbjct 7664 AATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGA 7605 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||||| ||||| || | |||||| | || || || | || | ||| || Sbjct 7604 ATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGATGGTTTTA 7545 Query 64415 CCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAATGATA 64456 || |||||||||||||||||||||||||| | || || ||| Sbjct 7544 CCAGTCAAAGTTTTTACGAAAATTTGCATGATGATTATAATA 7503 >seq769 Length=28997 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 154586 AGACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCA 154645 ||| || ||||| ||||| |||||||| |||| | | |||| | || || | ||| Sbjct 13009 AGATGCTAAGTTACAAACAGCAATTTCATCAGGTGCAGTATATTCGATGATCTCAGTGCA 12950 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 |||||||| | | ||| || |||| ||||| ||||| ||||| || ||||| || Sbjct 12949 TAAATTACTACTTTTAATCGTTCCCAAGTTTTGTTGATTGGATTTACGATTACATGCATC 12890 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATT 154754 ||||||||| ||||| || || || ||||| ||||| ||||||| ||| Sbjct 12889 TTTGTACAACATGTATGGCGTACCTGTTTCAACTTGACTTTCAATGATT 12841 >seq775 Length=28483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | || || || ||| | || || || || || || || |||||||||||||| Sbjct 10618 TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 10559 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || ||||| || || || | |||||| | || || || | ||| | | Sbjct 10558 TCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGATG 10499 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| |||||||||||||||||||| Sbjct 10498 GTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq6389 Length=961 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | ||| |||||||||||||| || ||||| || | || || | ||||| Sbjct 31 ACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCATCTTCT 90 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || || | || | || || ||||| || ||||| |||||||| ||||| Sbjct 91 AATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTATCTTGG 150 Query 64355 ATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTG 64414 || ||||| || ||| | | ||||| | || || |||| ||| | || || Sbjct 151 ATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGTATCTAGAGTAATTGTTTTT 210 Query 64415 CCGGTCAAAGTTTTTAC 64431 || || ||||||||||| Sbjct 211 CCAGTTAAAGTTTTTAC 227 >seq4707 Length=625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||||| || | ||||||||| || || ||||| | | || || | ||||| Sbjct 384 ACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGTCCATCTTCC 325 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | || || || ||| | || || || || || || ||||||||||||||||| ||||| Sbjct 324 AATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGG 265 Query 64355 ATTTTTTGCTTTAC 64368 || |||||||| || Sbjct 264 ATCTTTTGCTTGAC 251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499587678108240