Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq810 140 3e-28 seq2305 96.9 3e-15 seq775 93.3 4e-14 seq4707 89.7 5e-13 seq6389 82.4 8e-11 >seq810 Length=26514 Score = 140 bits (154), Expect = 3e-28 Identities = 176/241 (73%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| || |||||||||| ||| || ||||| ||||||||||| || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| || || | ||||||||| | | |||| ||||| ||||| || || || Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| || |||||||||| | ||| | || || | | || || Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG--GCTTATAATA 138625 || | || | ||||||||||||| ||||||||| ||||| |||||| | |||||||| Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATGATGATTATAATA 7503 Query 138626 T 138626 | Sbjct 7502 T 7502 >seq2305 Length=8964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || || | ||||||||||| | ||| || |||||||| |||||||| || Sbjct 1545 GCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACT 1486 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || || | |||||| || | | | || | ||| ||||| || || || Sbjct 1485 AAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGG 1426 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||||||||| || ||||||||||| | | ||| | || || | || || || Sbjct 1425 GATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTAC 1366 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCA 138592 || | ||| | ||||| ||||||| Sbjct 1365 ATCAAGCGTGATGGTTTTCCCAGTCA 1340 >seq775 Length=28483 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||||||||| | | |||| ||||| ||||| || || || || ||||||||| Sbjct 10618 TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 10559 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||| |||||||| | | ||| | || || | | || || || | || | Sbjct 10558 TCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGATG 10499 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||||||||||| |||||||| ||||| |||||| Sbjct 10498 GTTTTACCAGTCAATGTTTTTACGAAAATTTGCATG 10463 >seq4707 Length=625 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || |||||||| |||||||| | | ||| || ||||| || || || || Sbjct 402 CCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAA 343 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || | ||||||||| | | |||| ||||| ||||| || ||||| Sbjct 342 AGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGA 283 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTT 138536 || ||||||||||| ||| ||||| || Sbjct 282 ATTCCTTCTTTGTCTTGGATCTTTTGCTT 254 >seq6389 Length=961 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || ||||||||||||||||| | | || || |||||||| || || || ||| Sbjct 13 CCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCT 72 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| || || | ||||||||| | | || | || |||||||| || || Sbjct 73 AAT-GTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGG 131 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| |||||||| | | | ||| ||| | | ||| Sbjct 132 AATCCCTTCTTTATCTTGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGT 191 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACA 138603 || | || | ||||| ||||| | |||||||||| Sbjct 192 ATCTAGAGTAATTGTTTTTCCAGTTAAAGTTTTTACA 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496205664801120