Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq810 136 3e-27 seq2305 122 6e-23 seq6389 104 2e-17 seq775 95.1 9e-15 seq1282 89.7 4e-13 >seq810 Length=26514 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| |||||||| | || | |||||||| |||||||| || || || | | | || Sbjct 7728 TAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCATC 7669 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| |||||||| || || | || | ||| ||||| || |||||||||||| ||||| Sbjct 7668 TTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 7609 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| || |||||| |||| |||||||| |||||| || | ||| ||||| Sbjct 7608 TTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGATGGT 7549 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||| |||| ||||||||| ||||||||||| Sbjct 7548 TTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq2305 Length=8964 Score = 122 bits (134), Expect = 6e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || ||||||||||||||||| | || | |||||||| || ||||| || | Sbjct 1546 TGCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCAC 1487 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | | ||||| ||||||||||| || |||||||||| ||||| || || Sbjct 1486 TAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTG 1427 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || ||||| ||| || |||| |||||||| ||||| Sbjct 1426 GGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTA 1367 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCA 15154 | || | || |||||||| || |||| Sbjct 1366 CATCAAGCGTGATGGTTTTCCCAGTCA 1340 >seq6389 Length=961 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 ||||| || || | ||||||||||| | ||||| |||||||| || || ||||| ||| Sbjct 13 CCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCT 72 Query 15009 GAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 ||| || | |||||||||||||| || ||| ||||||| || |||||||| | Sbjct 73 ---AATGTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGT 129 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||| ||||| || || || || ||| ||| || |||||||| ||| Sbjct 130 GGAATCCCTTCTTTATCTTGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCT 189 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 |||| ||||| ||||| || || | |||||||||| Sbjct 190 GTATCTAGAGTAATTGTTTTTCCAGTTAAAGTTTTTACA 228 >seq775 Length=28483 Score = 95.1 bits (104), Expect = 9e-15 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| |||||||| || || | || | ||| ||||| || |||||||||||| ||| Sbjct 10618 TCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 10559 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || || || ||| || |||| |||||||| |||||| || | || ||| Sbjct 10558 TCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGATG 10499 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| |||| |||||||| ||||||||||| Sbjct 10498 GTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq1282 Length=23488 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || || | || ||| |||||||| | ||||| |||||||| |||||||||||| | Sbjct 1299 CCTCCACGAAGTCGTAATACTAAATGGACGGTAGCTTCTTTTTGAATGTTGTAATCG--G 1242 Query 15010 AGAATTCTCGCG--TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| |||| ||||| ||||| | || || | || | || ||||| || || Sbjct 1241 ATAATGTACGCGTATCTTCCAATTGATAACCTGCAAAAATAATTCGTTGTTGATCTGGTG 1182 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 || |||||| || | ||| || ||||||| | | || || | | | || Sbjct 1181 GACATCCTTCTTTCTTTTGAATCTTTAATTTTACATCTGCAATCAATTCATTTTGTAATA 1122 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| || || || |||||||| |||| ||||| ||||| | ||||||| Sbjct 1121 CGTCCAAAGTGATTGTTTTACCAGTCAACGTTTTAACAAAGAATTGCATA 1072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357352162630610