Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6389 132 4e-26 seq4160 116 3e-21 seq810 116 3e-21 seq769 114 1e-20 seq2305 104 2e-17 seq775 96.9 3e-15 seq4707 86.0 6e-12 >seq6389 Length=961 Score = 132 bits (146), Expect = 4e-26 Identities = 155/204 (76%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAAT 45186 ||| |||| ||||| ||| ||||| ||||| ||||||||||| ||| | | | | | Sbjct 27 CAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCA-T 85 Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTAT 45246 | || |||||||| |||||| ||||||||||||| ||||| || ||||| |||||||||| Sbjct 86 CTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTAT 145 Query 45247 CTTGAATTTTTTGTTTGA-TCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||| || |||||||| | ||| | ||| ||| | ||| || ||||||| Sbjct 146 CTTGGATCTTTTGTTTCACACGC-GAAATGGTATCGCTTGCCTCTGTATCTAGAGTAATT 204 Query 45306 GTTTTGCCGGTTAGAGTTTTTACA 45329 ||||| || |||| |||||||||| Sbjct 205 GTTTTTCCAGTTAAAGTTTTTACA 228 >seq4160 Length=5066 Score = 116 bits (128), Expect = 3e-21 Identities = 162/225 (72%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT--AAT 45168 || |||||||| | | || |||| ||| | |||| |||||| | ||| ||| | | Sbjct 1096 ATGCCTCCGCGCAAACGTAATACTAAATGTATCGTTTGTTCCTTAT--ATAATATGCATT 1039 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | || ||| || |||| ||||||||| ||| || |||||||| ||||| || | | Sbjct 1038 CACTTACGCACTTCCAATCTTCCAATTGTAGTCCCGCATATATCAAACGTTGTTGACCTG 979 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | || || |||||||||||||| ||||||||||| || | | | || || || | | Sbjct 978 GAGGGATACCTTCTTTATCTTGTATTTTTTGTTTTATATTTGCAATTGTATCAGATGGTT 919 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAA 45333 | || || ||||| | ||||| || |||| |||||| ||||||| Sbjct 918 CTACATCAAGAGTGATGGTTTTACCAGTTAAAGTTTTAACAAAAA 874 >seq810 Length=26514 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || || | || |||| ||| | |||| ||| |||||||| || || || || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| ||||||||||| ||||| | || | ||||| || || || ||| Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||| |||||||| |||||||| | ||| | || || || | || || Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||||| || || | ||||||||| ||||||||||| Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq769 Length=28997 Score = 114 bits (126), Expect = 1e-20 Identities = 358/545 (66%), Gaps = 37/545 (7%) Strand=Plus/Plus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 |||||| |||| | |||| | ||| || |||| ||||| || ||| ||| | ||| Sbjct 12488 ATGCTGAGAGTATTCAATGATACCGCACGTTACGTAGACCAAGGTGGCGGTAAAAGAAAA 12547 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAAT-TT 123352 || | | || || || | ||||| ||||| | |||||| | ||| |||||| || || Sbjct 12548 GGTTCTTTTGCTATTTACTTGGAACCATGGCATGCTGATGTCTTCGAGTTTTTAGATCTT 12607 Query 123353 AAAACGCAACATGGGGGCGGAAGAAAAGAAA---GCCCGCGATTTGTTGTACGCTTTATG 123409 |||| | ||||| | | ||||| | || ||||||||||| || || | || Sbjct 12608 AAAAAAAATCATGGTG----ATGAAAATGCACGTGCACGCGATTTGTTCTATGCAATGTG 12663 Query 123410 GGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCC 123469 | | || ||||| || ||| ||| ||| ||| || || ||| | | | || || Sbjct 12664 GATTCCAGATTTATTCATGAAACGTGTACAAGCAGATGGACAATGGACATTGTTTTGCCC 12723 Query 123470 CGATCGGTGTCCCG------GCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTA 123523 || || | || || |||| |||| || | | || || | ||||| Sbjct 12724 AAAT--GTTGCACGTGATTTGCATGAG--ACGTGG--GGTGAGAAATTCGAAGCATTGTA 12777 Query 123524 CGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAG----GTTCCGGCACGTGATTT-- 123577 | ||||| || |||||||| ||||| ||| || | |||| || || Sbjct 12778 CCATCAATATGAAAAAGAAGGCAAG--GGTTA--CAGAACCGTACGTGCACAAGAATTAT 12833 Query 123578 -GTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAG 123636 ||| ||| | ||| |||| ||||| ||||| || ||||| |||||| | ||||||| Sbjct 12834 GGTTTAAAATCATT---GAAAGTCAAGTTGAAACAGGTACGCCATACATGTTGTACAAAG 12890 Query 123637 ACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTT 123696 | || || || | ||| ||||||| ||||||||||| || ||| |||||||| | | Sbjct 12891 ATGCATGTAATCGTAAATCCAATCAACAAAACTTGGGAACGATTAAAAGTAGTAATTTAT 12950 Query 123697 GCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGA 123756 || | || || |||||||| | | | ||| || | || || ||||| || || || | Sbjct 12951 GCACTGAGATCATCGAATATACTGCACCTGATGAAATTGCTGTTTGTAACTTAGCATCTA 13010 Query 123757 TTTGC 123761 | ||| Sbjct 13011 TCTGC 13015 >seq2305 Length=8964 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||||| |||| ||| ||||| ||||| || || || | || | Sbjct 1532 CTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCA 1473 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||||||||| ||||| ||||||| ||||| || || || || || ||||||||| Sbjct 1472 TCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTA 1413 Query 45246 TCTTGAATTTTTTGTTT 45262 ||||| ||||||||||| Sbjct 1412 TCTTGTATTTTTTGTTT 1396 >seq775 Length=28483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||||||||| ||||| | || | ||||| || || || ||||| |||||||| Sbjct 10619 ATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 10560 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || |||||||| | ||| | || || || | || || || ||||| | Sbjct 10559 GTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGAT 10500 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | |||||||| ||||||||||| Sbjct 10499 GGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq4707 Length=625 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| |||| ||| || |||| ||| ||||||||||||||||| | || ||| Sbjct 388 CAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGTCCATC 329 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 ||||||||||| || || | || | ||||| || || || ||||| |||||||| || Sbjct 328 TTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTC 269 Query 45248 TTGAATTTTTTGTTTGA 45264 ||| || ||||| |||| Sbjct 268 TTGGATCTTTTGCTTGA 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451951524734160