Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq888 448 6e-121 >seq888 Length=1579 Score = 448 bits (496), Expect = 6e-121 Identities = 515/690 (75%), Gaps = 2/690 (0%) Strand=Plus/Plus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | ||| || ||||| ||||||| |||||||||||| ||||| Sbjct 887 AGAGCGTTTCCACGTGGAAGTACCTCCTCAGGGAATACAAGGTTTTCATGTGGCTGATCT 946 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | ||||||||| ||||| | |||||| || | || || ||||| || ||||| || Sbjct 947 TGAGCTGCCATCCATGCACGAATACCTTCGTTAAGAAGAATATTCTTTGTGTAGAATGTT 1006 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || ||||| ||||| || || || | ||||||||| || || || || || || | ||| Sbjct 1007 TCAAACTCAGGATCTTCAGCAGCACGGATCTCTTGCGATACGAAATCGTATGCACGGAGG 1066 Query 6443 TTAAGTGCAAGACCAATAATACCAA-TGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 ||| ||| | |||| || ||||| |||| || |||| | || | ||||| || || Sbjct 1067 TTACATGCTAATCCAACAACACCAAGTGCT-GACATCCATAATCCTGTTACAGGTACGAA 1125 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 ||||| ||||| || ||||||||||| || ||| || | ||| || ||||| ||||| Sbjct 1126 AAGCATGAAGAAGTGAAGCCAACGCTTGTTTGAGAATGCTACACCGAAAATCTGTGACCA 1185 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 |||||| ||||| || ||||| || || ||||| || ||||||| || | |||||| Sbjct 1186 GAAACGGTTAGCTGTTACCATTGAGTAAGTCTCTTCAGCTTGTGTTGGGTTAAACGCACG 1245 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAAT 6681 ||| || ||||| ||||||||||| || | || || ||||| || ||||||||||| Sbjct 1246 GAATGTGTTTGAACCATCACCATCTTCGAAAAGTGTGTTTTCTACTGTTGCACCGTGAAT 1305 Query 6682 AGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAG 6741 ||||| || | |||| | || | | || |||||||||||||| || || |||| || Sbjct 1306 TGCACAAAGAAGTGCTGCTCCAAGTACTCCAGCTACACCCATCATGTGGAATTGGTTAAG 1365 Query 6742 CGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAA 6801 |||||||||||||| || || | ||| || | || ||||| || | || ||||| || Sbjct 1366 TGTCCAGTTGTGGAACCCTTGGAAGAAAAGGATAAAACGGAAAATTCCAGCTACACCGAA 1425 Query 6802 CGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAA 6861 || || ||||||||||| | |||||||| || || || || || || ||||| || || Sbjct 1426 TGAAGGTGCAAAGAACCATCCTGACTGTCCAAGTGGGTAAATAAGGAATACAGATACGAA 1485 Query 6862 GACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGC 6921 |||||||| ||| | || ||||| ||||| ||||| |||||||| ||| |||||| Sbjct 1486 TACAGCAATAGGAGCTGAGAACGCAATTGCGTTGTACGGACGAATTTGTACTGCACGTGC 1545 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTAT 6951 || ||||| || |||||||| || || || Sbjct 1546 AATTTCAAATTGACGAAGCATAAATCCGAT 1575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622053675582240