Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6389 96.9 2e-15 seq810 95.1 8e-15 seq775 86.0 4e-12 seq6132 84.2 2e-11 seq4707 84.2 2e-11 seq734 84.2 2e-11 >seq6389 Length=961 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||||| || |||||||| || ||||||||| ||||||||||| || Sbjct 13 CCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCT 72 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || |||||||| || | || || || || || || || | || Sbjct 73 AATGTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGA 132 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC- 39671 | |||||||| || || |||||||| | || | || | ||||| || | Sbjct 133 ATCCCTTCTTTATCTTGGATCTTTTGTTTCACACGCGAAATGGTAT---CGCTTGCCTCT 189 Query 39672 --GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 || | |||||||||||| || |||||||||||||| Sbjct 190 GTATCTAGAGTAATTGTTTTTCCAGTTAAAGTTTTTAC 227 >seq810 Length=26514 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | ||| ||||| ||||| ||||||||| || || || || | Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCA--C 7685 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 || | ||| |||| ||||||||||| || |||| || | ||| || ||||| | | Sbjct 7684 TAAGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTG 7625 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||||||||| || |||||||| | | | | || || | ||| | Sbjct 7624 GAATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTA 7565 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | || || |||||||| || |||||||||||||| || |||||| Sbjct 7564 CATCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATG 7515 >seq775 Length=28483 Score = 86.0 bits (94), Expect = 4e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 39559 CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCT 39618 ||| |||| ||||||||||| || |||| || | ||| || ||||| | || | ||| Sbjct 10624 CGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCT 10565 Query 39619 TCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAA 39678 |||||||| || |||||||||| | | | || || | ||| || || | | Sbjct 10564 TCTTTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGA 10505 Query 39679 GTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || |||||||| || || ||||||||||| || |||||| Sbjct 10504 GTGATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATG 10463 >seq6132 Length=2928 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42512 ATGTTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTG-TTCTTTATG 42570 || || ||||||||||||| |||| ||||||||| || ||| | || || |||||| Sbjct 1230 ATATTTCCTAAATCACCAACGTGTCTTTCTTCATCTTGAGGTGCACCATGATTCTTT-CC 1172 Query 42571 AAAAGGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATG 42630 ||| |||||| |||| ||||||| | | || |||||| | ||| |||| ||||| Sbjct 1171 AAATGGATTATAATGCCCACCAGCACTTTTGCAACCATTGCTAAAATCAGCAAACTCATG 1112 Query 42631 TATATGAAAACCGTG 42645 ||| || || ||||| Sbjct 1111 TATGTGGAATCCGTG 1097 >seq4707 Length=625 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||||| ||| ||||| | || ||||||||| ||||||||||| | Sbjct 402 CCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAA 343 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| ||||||||||| || |||| || | ||| || ||||| | || Sbjct 342 AGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGA 283 Query 39613 ACGCCTTCTTTGTC 39626 | ||||||||||| Sbjct 282 ATTCCTTCTTTGTC 269 >seq734 Length=33368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/235 (68%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||||||| | ||| |||||||| | ||| | ||||||||||||||||| Sbjct 10542 GCCTCCACGCAAACGTAATACTAAATGCAATACGGCTTCCTCTTGTATATTATAATCGGA 10483 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 || || |||| || | ||| || || |||| || ||||| || ||||| | || Sbjct 10482 TAATGTACGACCATCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTGG 10423 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||| || ||||||| ||| | | | | ||| |||| || | Sbjct 10422 AATACCTTCTTTATCTTGTATTTTTAATTTTGTATTTTCAATTGTATCTG----TTGAAG 10367 Query 39672 GTCCAA----AGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTC 39722 | ||| ||| || |||||||| || || |||||||| || ||| ||| || Sbjct 10366 GAACAAAAAGAGTGATGGTTTTACCAGTCAAGGTTTTTACAAATATCGTCATCTC 10312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347330879796218