Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8698 174 2e-38 seq810 111 2e-19 >seq8698 Length=1787 Score = 174 bits (192), Expect = 2e-38 Identities = 400/589 (68%), Gaps = 19/589 (3%) Strand=Plus/Plus Query 132892 AAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTC 132951 ||||| || || || |||||||| || || || | ||||| | |||||| ||||| | Sbjct 1201 AAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTT--TGAAAAAC 1258 Query 132952 A--AGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAA 133009 | | || ||||| | || |||||||| | |||||| | ||| ||| || | Sbjct 1259 ATAAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGA 1318 Query 133010 AGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGC-TTCTTTG 133068 |||||| || || || ||||| || || | |||||| |||||| || || | || Sbjct 1319 AGAAGATACCTTCACACGCAGCGAATGCAACGACGCGCTCTGCGAACGATGCGTTGTCTG 1378 Query 133069 CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACG-CACGGCATCGTTTCGAT 133127 | | | |||| |||| |||||| || |||||||||||| || | || || || || Sbjct 1379 C-GTTGGTCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCG-ATTGTATCAAT 1436 Query 133128 GGCGTTCAACAAACGGAGTTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTC 133185 || ||||||||||| ||| ||| || | ||| | ||| ||||| || | Sbjct 1437 AGCATTCAACAAACGCGTTTTTTCTG--GACCATTACGAATGTAAGTGTCTATTAACAAG 1494 Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 ||||||| ||| | || | || || || |||||||||||||| || || || || || Sbjct 1495 GAATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCT 1554 Query 133246 TCGACCACCTGCACTTC-TTGAGCGAAACGCTC--GACCAGATTTTCGTTGACGATGCCG 133302 || ||| |||||||| ||| |||| | || | || ||||||||| || || ||| Sbjct 1555 TCAGGCACTTGCACTTCGTTG---GAAAAGTTCATCAACAAATTTTCGTTTACAATACCG 1611 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 ||| || |||||||| |||| |||| | ||||| | || ||||| ||| ||| Sbjct 1612 TCGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATT 1671 Query 133363 CGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCC 133422 ||||| || || || | | || ||| | ||| || | ||||| || || || Sbjct 1672 TTATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCT 1731 Query 133423 TCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTA-TGGGAAAA 133470 || |||||||| ||||| ||| || || || ||| | |||||||| Sbjct 1732 TCAGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAAA 1780 >seq810 Length=26514 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||||||||| | || || |||||||||||| | || || || | | Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| | ||| |||| || | |||||||| |||||||| | || || Sbjct 7576 GATACTATTGAAAACG-TAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCA 7634 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || || || | || || ||||| |||| || | || || || | |||||||| Sbjct 7635 ACAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGTGACTACAA 7694 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 ||||||||| ||||| || | ||||| || Sbjct 7695 CATCCAAAAAGAAGCAACTTTACATTTAGT 7724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500115617744640