Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq769 143 3e-29 seq8698 84.2 3e-11 >seq769 Length=28997 Score = 143 bits (158), Expect = 3e-29 Identities = 354/530 (67%), Gaps = 9/530 (2%) Strand=Plus/Minus Query 110617 TTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCA 110676 |||||||| | || ||||||||||| || |||| | || || ||| || | |||| Sbjct 12684 TTCATGAATAAATCTGGAATCCACATTGCATAGAACAAATCGCGTGCACGTGCATTTTCA 12625 Query 110677 TCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGA 110736 ||||| || || || || ||||| || | || ||| | ||||||||||| | Sbjct 12624 TCACCATGATTTTTTTTAAGATCTAAAAACTCGAAGACATCAGCATGCCATGGTTCCAAG 12565 Query 110737 TAGACAGCGATGGATCCCTTACGACGACC--CGCCT-GGTTAACATAGCGTGCTGTGGCA 110793 || | ||| | || || || | ||| | ||| ||| || || ||||| || || Sbjct 12564 TAAATAGCAAAAGAACCTTTTCTTTTACCGCCACCTTGGTCTACGTAACGTGCGGTATCA 12505 Query 110794 TTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGA-CCATTTGTACCCCTAATTCT 110852 ||||| || || ||||| || | |||||||| |||| ||||||||||| | || Sbjct 12504 TTGAATACTCTCAGCATTGGGACAATTCCATTAC-TTGAGCCATTTGTACCGCGGATGTA 12446 Query 110853 GGACTT--ATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTA 110910 |||| | | ||| |||| ||| | | || ||||||||||| || | ||||| Sbjct 12445 --ACTTCCAGTACTACGGATGTTGTGAACACTCAATCCAATACCACCAGCATATTTACTG 12388 Query 110911 ATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCA 110970 ||||| ||||| | | | ||| |||||||||| |||| ||||| | || | ||| Sbjct 12387 ATTTGCGCACAAGATTTTAACGTATCATAAATACCTCCAATGGAATCATCTTTCATTGCA 12328 Query 110971 ATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTC 111030 | | |||||| || | || || || || || || || |||||||| | ||| || || Sbjct 12327 ACCAAAAAGCATGATGCCAATTGTGGGCGTGGGGTACCAGCATTGAACAATGTCGGCGTT 12268 Query 111031 GCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCT 111090 ||||| | |||| || |||| | ||||||| | || | | |||| Sbjct 12267 GCATGGGTAAACATCATTTTACTCATCAAATCGTATGTGATAATAGCACTGTCGATATCT 12208 Query 111091 TTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTC 111140 | ||||||||||| ||||| ||||| | ||||| ||| || |||| Sbjct 12207 TCCTTGTGAATACCAACTGCAACACGCATAATCATATGTTGTGGTCTTTC 12158 >seq8698 Length=1787 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 119817 TGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAAAATTGTTGTTG 119876 ||| || |||| || | || ||||| | | ||||||||||| | ||| || | Sbjct 1531 TGAAAGCCATAGAAACAACGTGCTTCAGGCACTTGCACTTCGTTGGAAAAGTTCATCAAC 1590 Query 119877 ATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGCTAAGATGTACTTTATGAAT 119936 | |||||| ||||| || |||||| ||||||| ||||| || | || | ||||| Sbjct 1591 AAATTTTCGTTTACAATACCGTCGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAG 1650 Query 119937 TTCTGTTCATTATCGTTGAGTGTTTTCCAGTCGTCCATATCTTTAGACAAGTCCACCTCT 119996 | |||| |||||| | | | | | ||| || | | ||||| | |||||| | |||| Sbjct 1651 TAACGTTCGTTATCGCTCATTTTATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCT 1710 Query 119997 TCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAGAGTTCCCAAA 120042 || || |||||| ||| | || |||||||| | || ||||| Sbjct 1711 TCCGCAGTCCAGAAAGATGCTTCAGCTTTTTTATACATTTGCCAAA 1756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588908665318800