Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq888 363 2e-95 seq3564 150 2e-31 >seq888 Length=1579 Score = 363 bits (402), Expect = 2e-95 Identities = 510/715 (71%), Gaps = 23/715 (3%) Strand=Plus/Minus Query 170853 ATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAAC 170912 || || || ||||| | |||||||| || ||| | ||| || | || |||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 170913 GCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCA-TCTTTCTGATCTATCCACT 170971 ||| | || ||||| ||| ||| || || ||| || | | || || || || ||||| Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCG-TATCTGTATTCCTTATTTACCCACT 1457 Query 170972 AGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATAT 171031 || ||| | |||||||| ||||| ||||||||||| || | |||||| |||| ||| Sbjct 1456 TGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTAT 1397 Query 171032 CTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGC 171091 | | ||| | ||||| ||||||||| ||| | || | ||| |||||||||||||| || Sbjct 1396 CCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGC 1337 Query 171092 AGGAATACTAGGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATT 171151 ||| |||| || | |||| | | ||||| ||||| ||||||||||| | |||||| | Sbjct 1336 TGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACT 1277 Query 171152 GTATGAAGACACATCAGTTTATACTGATAATAAAATTCAAAGCACAACATTCCGTGCCTT 171211 | ||||| || | || |||||| ||||||||||| || Sbjct 1276 TTTCGAAGA---------------TGGTGATGG--TTCAAAC----ACATTCCGTGCGTT 1238 Query 171212 TGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCACA 171271 | | || ||||| | ||||| |||||| ||| | ||||| ||| | ||||||||||| Sbjct 1237 TAACCCAACACAAGCTGAAGAGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACA 1178 Query 171272 GATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTTCC 171331 ||| || ||| | || ||||| ||||| | | | |||||| | ||| | ||||| || Sbjct 1177 GATTTTCGGTGTAGCATTCTCAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACC 1118 Query 171332 TGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGC 171391 ||| | || | |||| ||| | | ||| | || || ||||| ||||||| | || Sbjct 1117 TGTAACAGGATTATGGATGTCAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGC 1058 Query 171392 ATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTA 171451 ||||||||| ||||| |||||||| | || || ||||| || ||||| || || ||||| Sbjct 1057 ATACGATTTCGTATCGCAAGAGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTA 998 Query 171452 CACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGACCAACC 171511 ||| |||||||| |||||||| |||||||| | ||||||||| || | || || || Sbjct 997 CACAAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCC 938 Query 171512 ACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 |||||| ||| | |||||||| || || || | ||| | || ||||| |||||| Sbjct 937 ACATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAA 883 >seq3564 Length=5900 Score = 150 bits (166), Expect = 2e-31 Identities = 437/665 (66%), Gaps = 22/665 (3%) Strand=Plus/Plus Query 154461 TGCACAATGAAATTAAATGCAGCAGCAGAACTAATGCCTGTGTCATGGGAAGAGTTTGCT 154520 ||||| ||||||||||| | ||| ||| | ||||| |||||| ||| ||||| Sbjct 2705 TGCACGATGAAATTAAACTCTGCATTGGAAATGGAACCTGTTTCATGGCCAGAATTTGCA 2764 Query 154521 AACGTGCATCCACATACACC-TATGATACAGACCATGGGTTATCAGAAAATTATAGATGA 154579 || | ||||| | |||| | | || || | |||||| || |||| || ||| Sbjct 2765 AATATACATCCGTTTGCACCATCTCATCAAGTT-ACAGGTTATAAGGAAATGATCGATAC 2823 Query 154580 CTTACAGAAATGG----TTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTA 154635 |||| ||||| || || || ||| |||| | || |||| || || | Sbjct 2824 CTTA----AATGGCGCATTGGCGGAAATTACACAATTTGCTGCTGTATCTACCCAGCCCA 2879 Query 154636 ACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGAT 154695 | | || || || || ||||| || | || |||| ||||||| |||| Sbjct 2880 ATTCCGGCGCAGCTGGGGAATATGCGGGTTTATTCTGTATCCGTAAATACCATGAAGGCA 2939 Query 154696 CAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTG 154755 || || | | | | || |||| ||||| ||| ||||| ||||| || ||||| | Sbjct 2940 ACGGTGAAGCTCATCGTAACATATGCTTGATTCCATTATCAGCTCATGGTACAAATCCAG 2999 Query 154756 CTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACA 154815 | ||||| ||||||||||| |||||||| || ||| || ||||||| || || Sbjct 3000 CAAGTGCCGTCATGGCAGGTATGAAAGTCGTTACTGTGAAAAGTGATGAATTAGGAAATG 3059 Query 154816 TAGACATCAAAGATCTAGAGAAGAAAGCA----ATCATGAATACATTTGAACTGTCATGT 154871 | || || | ||| || | |||||| | || || | | | | || | | Sbjct 3060 TTGATATAGATGATTTAAAAGCAAAAGCAGAGAAACACAAAGATAATCTAGGTGCCTTA- 3118 Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGA--AACTAACATTAGACAGATAT 154929 ||| | || || ||||| ||| ||||||| ||||| || | | || | ||| Sbjct 3119 ---ATGGTAACGTATCCATCAACATATGGTGTGTTTGAGGAAGGTATTGTTGAAAT-TAT 3174 Query 154930 GTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCAC 154989 | | | | ||||| ||||| || ||||| | ||||| |||||| | ||||| | Sbjct 3175 -TGATACCATTCATAGTCGCGGTGGACAAGTATACATGGATGGGGCAAATATGAATGCTC 3233 Query 154990 AGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATA 155049 | |||||| || | || || | ||| ||||| ||||||||| | || ||||||| Sbjct 3234 AAGTAGGATTATGTAGTCCTGGTAAAATTGGCGCAGACGTATGTCATTTGAATTTACATA 3293 Query 155050 AAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAA 155109 ||||||| |||||||||||||| ||||| ||||| || || || | || ||||| |||| Sbjct 3294 AAACATTTTGTATTCCACATGGTGGTGGTGGTCCAGGAGTTGGATCCATTGGTGTTGCAA 3353 Query 155110 AACAT 155114 ||||| Sbjct 3354 AACAT 3358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579146581496640