Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq888 426 2e-114 >seq888 Length=1579 Score = 426 bits (472), Expect = 2e-114 Identities = 515/701 (73%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 169627 ATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATCCGTCCTTA 169686 ||| || || || |||||| | || |||||| | |||||| | || ||||| || Sbjct 1579 ATTAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTA 1520 Query 169687 TAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTTCTTATCTACCC 169746 || || ||||| ||||| | ||||||||||||||| || ||| || ||||| ||||| Sbjct 1519 CAACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCC 1460 Query 169747 ACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCAATCTTCAGGTT 169806 |||||||||||| |||||||||||| || || || || ||| | | ||| ||| | || Sbjct 1459 ACTTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTT 1400 Query 169807 CCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGT 169866 | | ||| | ||||| |||||||||||||| | || | |||||||||||||||||| Sbjct 1399 TATCCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGT 1340 Query 169867 AGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACAGTAGAGAACAC 169926 ||| ||| | | || | |||| | |||| ||| || || |||| |||||||| ||||| Sbjct 1339 AGCTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACAC 1280 Query 169927 ATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGA 169986 | | | ||||| ||||| |||| || ||| |||||| | | ||||| | || Sbjct 1279 ACTTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1220 Query 169987 AGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTT 170046 ||||||||| || ||||| || || ||||| |||||||| ||||| |||||| | || || Sbjct 1219 AGAGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATT 1160 Query 170047 TTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGAC 170106 || ||||||||||||||||| || |||||| | || || ||||| | || | |||| Sbjct 1159 CTCAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGAT 1100 Query 170107 ATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCA 170166 || | |||| || |||| | || || || ||||| ||||||||||| || Sbjct 1099 GTCAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCA 1040 Query 170167 GGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATT 170226 |||||| | || || |||||||| || ||||| || |||||||| || || || || | Sbjct 1039 AGAGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCT 980 Query 170227 GAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTT 170286 || ||||| ||||||||||| ||||| || ||||| |||||||||||| | | || Sbjct 979 TAACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATT 920 Query 170287 CCCAGAAGAAGTTCTTCCGAGAGGTAACGCACTGTGATCCA 170327 ||| || || || ||||| | || ||||| || | || || Sbjct 919 CCCTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAATTCA 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574407923305680