Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq888 367 1e-96 >seq888 Length=1579 Score = 367 bits (406), Expect = 1e-96 Identities = 496/691 (72%), Gaps = 0/691 (0%) Strand=Plus/Minus Query 165516 TAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACGTCTCATCGGTATCCGTCCCTACA 165575 |||| || || ||||||||||| |||||| | |||||| | || ||||| |||| Sbjct 1577 TAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACA 1518 Query 165576 ATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTC 165635 | || ||||||||||| | |||||| ||||| || || || || || || ||||| | Sbjct 1517 ACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCAC 1458 Query 165636 TGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCC 165695 | || || || | ||||| || || || || ||||| || || | ||| ||| | || Sbjct 1457 TTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTA 1398 Query 165696 TTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTG 165755 | || ||| | ||||| ||||| |||||||| | || | || || ||||||||||| | Sbjct 1397 TCCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAG 1338 Query 165756 CAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTC 165815 | || | || || | ||| | |||| ||| || || |||| |||||||| || || | Sbjct 1337 CTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACAC 1278 Query 165816 TGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAG 165875 | | |||||||||| | | |||| || ||| || ||| || | || |||| |||| Sbjct 1277 TTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAG 1218 Query 165876 AAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTA 165935 | || ||||||||||| || || |||||||||||||| ||||| |||||| | || || Sbjct 1217 AGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCT 1158 Query 165936 GTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAA 165995 || ||| | ||| | || ||||| ||||| || || ||||| | || | |||| Sbjct 1157 CAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGT 1098 Query 165996 GTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAG 166055 | | ||| || |||| | || ||||| ||||| || || || ||||| |||| Sbjct 1097 CAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAG 1038 Query 166056 AGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGA 166115 ||||| | || || ||||| || ||||||||||| |||||||| || || ||||| | | Sbjct 1037 AGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTA 978 Query 166116 ATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCC 166175 | |||||| ||||||| ||| ||||| | ||||| || ||||| ||| |||| |||| Sbjct 977 ACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCC 918 Query 166176 CTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 |||| || || || || | || ||||| || Sbjct 917 CTGAGGAGGTACTTCCACGTGGAAACGCTCT 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556861129572240