Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq888 372 4e-98 seq3564 131 2e-25 >seq888 Length=1579 Score = 372 bits (412), Expect = 4e-98 Identities = 512/715 (72%), Gaps = 23/715 (3%) Strand=Plus/Minus Query 173275 ATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAAC 173334 || || || ||||| ||||| ||||| || ||| | ||| || | || |||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 173335 GCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACTAGCA-TCTTTTTAATCTACCCACT 173393 ||| | || ||||| ||| ||| || || ||| || | | || | || |||||||| Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCG-TATCTGTATTCCTTATTTACCCACT 1457 Query 173394 AGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATAT 173453 || ||| | |||||||| ||||||||||||||||| || | ||| || |||| ||| Sbjct 1456 TGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTAT 1397 Query 173454 CTTATTCATACAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGC 173513 | | ||| | ||||| ||||||||| ||| | || | ||| |||||||||||||| || Sbjct 1396 CCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGC 1337 Query 173514 AGGAATACTAGGTGGAGCATTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATT 173573 ||| |||| || | |||| | || ||||| ||||| ||||||||||| | |||||| | Sbjct 1336 TGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACT 1277 Query 173574 GTATGAAGACACATCACAATATACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATT 173633 | ||||| | ||| ||| |||| | || ||| | || || Sbjct 1276 TTTCGAAGA------------TGGTGATGGT-----TCAAAC----ACATTCCGTGCGTT 1238 Query 173634 TGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACA 173693 | | || ||||| | ||||| ||||| ||| | ||||| ||| | ||||||||||| Sbjct 1237 TAACCCAACACAAGCTGAAGAGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACA 1178 Query 173694 GATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTCGTACC 173753 ||| || ||| | ||||| |||||||| | | | |||||| ||||| | |||||||| Sbjct 1177 GATTTTCGGTGTAGCATTCTCAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACC 1118 Query 173754 TGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTAGAGC 173813 ||| | || | |||| ||| | | ||| | || || | ||| |||||| | || Sbjct 1117 TGTAACAGGATTATGGATGTCAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGC 1058 Query 173814 ATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTA 173873 |||||| || ||||| |||||||| | || || |||||||| ||||| || || ||||| Sbjct 1057 ATACGATTTCGTATCGCAAGAGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTA 998 Query 173874 CACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGATCAACC 173933 ||| |||||||| |||||||| |||||||| | ||||||||| || || |||||| || Sbjct 997 CACAAAGAATATTCTTCTTAACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCC 938 Query 173934 ACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 173988 |||||| ||| | ||||| || || || || | ||| | || ||||| |||||| Sbjct 937 ACATGAAAACCTTGTATTCCCTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAA 883 >seq3564 Length=5900 Score = 131 bits (144), Expect = 2e-25 Identities = 429/663 (65%), Gaps = 18/663 (3%) Strand=Plus/Plus Query 159136 TGTACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTGTCATGGGAAGAGTTTGCT 159195 || || |||||| ||||| | |||| ||| || ||||| |||||| ||| ||||| Sbjct 2705 TGCACGATGAAATTAAACTCTGCATTGGAAATGGAACCTGTTTCATGGCCAGAATTTGCA 2764 Query 159196 AACGTGCATCCACATACACC-TATGATACAGACCATGGGTTATCAAAAAATTATAGATGA 159254 || | ||||| | |||| | | || || | |||||| | |||| || ||| Sbjct 2765 AATATACATCCGTTTGCACCATCTCATCAAGTT-ACAGGTTATAAGGAAATGATCGATAC 2823 Query 159255 CTTACAGAAATGG----TTATGTGATATCACAGGGTTTGATTCTATATCATTACAACCTA 159310 |||| ||||| || || || ||| |||| | || |||| || || | Sbjct 2824 CTTA----AATGGCGCATTGGCGGAAATTACACAATTTGCTGCTGTATCTACCCAGCCCA 2879 Query 159311 ACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGAT 159370 | | || || || || ||||| || | || |||| ||||||| |||| Sbjct 2880 ATTCCGGCGCAGCTGGGGAATATGCGGGTTTATTCTGTATCCGTAAATACCATGAAGGCA 2939 Query 159371 CAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTG 159430 || || | | | | || |||| ||||| ||| ||||| ||||| || ||||| | Sbjct 2940 ACGGTGAAGCTCATCGTAACATATGCTTGATTCCATTATCAGCTCATGGTACAAATCCAG 2999 Query 159431 CATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACA 159490 || || || |||||||| |||||||| || ||| || ||||||| || || Sbjct 3000 CAAGTGCCGTCATGGCAGGTATGAAAGTCGTTACTGTGAAAAGTGATGAATTAGGAAATG 3059 Query 159491 TAGACATCAAAGATCTAGAGAAGAAAGCA----ATCATGAATACATTTGAACTGTCATGT 159546 | || || | ||| || | |||||| | || || | | | | || | | Sbjct 3060 TTGATATAGATGATTTAAAAGCAAAAGCAGAGAAACACAAAGATAATCTAGGTGCCTTA- 3118 Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGACAGATATGT 159606 ||| | || |||||||| ||| ||||||| ||||| | || | || | Sbjct 3119 ---ATGGTAACGTATCCATCAACATATGGTGTGTTTGAGGAAGGTATTGTTGAAATTATT 3175 Query 159607 AAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAG 159666 | | ||||| ||||| || ||||| | ||||| |||||| | ||||| || Sbjct 3176 GATACCATTCATAGTCGCGGTGGACAAGTATACATGGATGGGGCAAATATGAATGCTCAA 3235 Query 159667 GTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAG 159726 ||||| || | || || | ||| ||||| ||||||||| | || |||||||| Sbjct 3236 GTAGGATTATGTAGTCCTGGTAAAATTGGCGCAGACGTATGTCATTTGAATTTACATAAA 3295 Query 159727 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAA 159786 ||||| |||||||||||||| ||||| ||||| || || || | |||||||| |||||| Sbjct 3296 ACATTTTGTATTCCACATGGTGGTGGTGGTCCAGGAGTTGGATCCATTGGTGTTGCAAAA 3355 Query 159787 CAT 159789 ||| Sbjct 3356 CAT 3358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587983971046560