Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq888 376 3e-99 >seq888 Length=1579 Score = 376 bits (416), Expect = 3e-99 Identities = 502/695 (72%), Gaps = 2/695 (0%) Strand=Plus/Minus Query 163945 ATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGCCTGATTGGAATCAGACCCTACAAT 164004 || || || |||||||| ||||||||| |||| || | ||| | || ||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 164005 GCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTG 164064 || ||||| ||||| | |||||||||||| ||||| ||| || || || ||||| || Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 164065 GGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCAATCTTCAGATTCCTC 164124 || || ||| | |||||||| || || || || || || || | ||| ||| | || || Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 164125 TTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCT 164184 | ||| | ||||| || || |||||||| | |||| ||||| |||||||| || ||| Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 164185 GGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTG 164244 || |||| || | |||| | || | ||| |||||||| | ||||| ||||| ||| | Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 164245 TATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 164304 | |||||||| || ||||||| || |||||| | | ||||| | |||||| Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 164305 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCT 164364 ||||| || ||||| || || ||||| |||||||| ||||| |||||||| || || || Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 164365 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCC 164424 |||||||| |||||||| || |||||| | || || ||||| | || |||||| || Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTCA 1096 Query 164425 TCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAG 164484 | |||| || |||| | || || || ||||| |||||||| ||| |||||| Sbjct 1095 GCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGAG 1036 Query 164485 ATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAGAACA-TCTTATTGAA 164543 || | || || |||||||||||||| || || ||||| || ||||| | |||| || || Sbjct 1035 ATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTT-AA 977 Query 164544 CGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGCCAGGAGAACGGTTTGTCTTCCC 164603 |||||| | ||||||||| | ||| | || |||||| ||| |||| ||||| Sbjct 976 CGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCC 917 Query 164604 AGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 || || ||||| || | || || || ||||||| Sbjct 916 TGAGGAGGTACTTCCACGTGGAAACGCTCTTTAAT 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557520254209200