Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq888 390 1e-103 >seq888 Length=1579 Score = 390 bits (432), Expect = 1e-103 Identities = 501/691 (73%), Gaps = 0/691 (0%) Strand=Plus/Minus Query 168805 TAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTATCCGTCCCTACA 168864 ||||||| || ||||||||||| |||||| | |||||| | || ||||| |||| Sbjct 1577 TAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACA 1518 Query 168865 ATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTC 168924 | || ||||||||||| | |||||| ||||| || || || || || || ||||| | Sbjct 1517 ACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCAC 1458 Query 168925 TGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCC 168984 | || || || | ||||| || || || || ||||| || | | ||| ||||| || Sbjct 1457 TTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTA 1398 Query 168985 TTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAG 169044 | || ||| | ||||| ||||| ||||||||||| || | ||| || ||||||||||||| Sbjct 1397 TCCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAG 1338 Query 169045 CAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTC 169104 | || | | |||| ||| | |||| ||| ||||| |||| |||||||| || || | Sbjct 1337 CTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACAC 1278 Query 169105 TGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGG 169164 | | |||||||||| |||| || ||| || ||| || || || | || | Sbjct 1277 TTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAG 1218 Query 169165 AGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCA 169224 |||| || |||||||| || || |||||||||||||| ||||| || ||| | || ||| Sbjct 1217 AGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCT 1158 Query 169225 GTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAA 169284 || ||| | ||| | || ||||| ||||| || || ||||| | || | |||| Sbjct 1157 CAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGT 1098 Query 169285 GTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAG 169344 | | ||| || |||| | || ||||| ||||| || || || || || |||| Sbjct 1097 CAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAG 1038 Query 169345 AGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGA 169404 ||||| | || || |||||||| |||||||| || |||||||| ||||| || || | | Sbjct 1037 AGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTA 978 Query 169405 ACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCC 169464 |||||||| ||||||||||| | ||| || ||||| || ||||| ||| |||| |||| Sbjct 977 ACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCC 918 Query 169465 CTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||||||| |||||||| || || || || || Sbjct 917 CTGAGGAGGTACTTCCACGTGGAAACGCTCT 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560543908490400