Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq888 423 2e-113 >seq888 Length=1579 Score = 423 bits (468), Expect = 2e-113 Identities = 510/694 (73%), Gaps = 0/694 (0%) Strand=Plus/Minus Query 183505 ATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAAT 183564 || || || |||||||| || |||||| |||| || | || ||||| ||||| Sbjct 1575 ATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACAAC 1516 Query 183565 GCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTG 183624 || ||||||||||| | |||||||||||| || || |||||||||||| || ||||| Sbjct 1515 GCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCACTT 1456 Query 183625 GGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTA 183684 || ||||| |||||||||||||||| ||||| ||||| | ||| || | || | Sbjct 1455 GGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTATC 1396 Query 183685 TTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCT 183744 | ||| | || || |||||||||||||| | |||| ||||| |||||||| || ||| Sbjct 1395 CTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAGCT 1336 Query 183745 GGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTG 183804 || |||| |||| |||||| || |||| || || |||| |||||||| || ||| | Sbjct 1335 GGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACACTT 1276 Query 183805 TATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAG 183864 | |||||||| || ||||||||||| || ||| | | || |||| |||||| Sbjct 1275 TTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAGAG 1216 Query 183865 ACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGC 183924 || || || ||||| ||||| || |||||||||||||| || ||||| || || || Sbjct 1215 ACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCTCA 1156 Query 183925 AATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCT 183984 || ||||||||| | |||||||| ||| | || || ||||| | || | ||| | || Sbjct 1155 AACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGTCA 1096 Query 183985 TCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAG 184044 | |||| | |||| | || ||| || ||||| || ||||| ||| |||||| Sbjct 1095 GCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAGAG 1036 Query 184045 ATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAAT 184104 ||| | || || |||||||| || ||||| || |||||||||||||| || |||||||| Sbjct 1035 ATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTAAC 976 Query 184105 GAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCA 184164 ||||| | ||||||||| | ||| || ||||| |||||||| || || |||| || Sbjct 975 GAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCCCT 916 Query 184165 GAGGAGGTATTACCTAGAGGCAATGCTCTTTGAT 184198 ||||||||| | || | || || ||||||| || Sbjct 915 GAGGAGGTACTTCCACGTGGAAACGCTCTTTAAT 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611626067854800