Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq810 168 1e-36 seq775 141 2e-28 seq4707 132 1e-25 seq6389 131 4e-25 seq2305 123 6e-23 seq734 91.5 3e-13 seq3001 87.8 4e-12 >seq810 Length=26514 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 |||||||| || ||||| || ||| || | |||||||| | || |||||||| ||| Sbjct 7706 TCTTTTTGGATGTTGTAGTCACTAAGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAG 7647 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 ||||| |||||||| ||||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct 7646 ATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTT 7587 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 ||||| || || || ||| || |||||||| | || || || ||||||||||||||| Sbjct 7586 TCAATAGTATCAGATGGTTCTACATCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACG 7527 Query 195130 AACACTTGCAT 195140 || | |||||| Sbjct 7526 AAAATTTGCAT 7516 >seq775 Length=28483 Score = 141 bits (156), Expect = 2e-28 Identities = 126/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || |||||||| |||||||| |||||||| ||||| ||||| |||||| Sbjct 10621 CCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCT 10562 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || ||||| || ||||| ||||| || || || ||| || ||||| || Sbjct 10561 TTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTG 10502 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||| ||||||||||| | |||||| Sbjct 10501 ATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || |||||||| |||||||| |||||||| ||||| ||||| |||||| Sbjct 10701 CCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCT 10642 Query 195043 TTGTCTTGAATTTTTT 195058 |||||||| || |||| Sbjct 10641 TTGTCTTGGATCTTTT 10626 >seq4707 Length=625 Score = 132 bits (146), Expect = 1e-25 Identities = 106/128 (83%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || | |||||||| ||||| ||||| | |||||| | |||||||| | || Sbjct 378 TGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGTCCATCTTCCAATTGT 319 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || |||||||| |||||||| ||||||||||| |||||||||||||| || ||| Sbjct 318 TTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGGATCTTT 259 Query 195058 TGCTTGAC 195065 |||||||| Sbjct 258 TGCTTGAC 251 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 195007 AAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGAC 195065 |||||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||| Sbjct 623 AAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCTTTGTCTTGGATCTTTTGCTTGAC 565 >seq6389 Length=961 Score = 131 bits (144), Expect = 4e-25 Identities = 152/204 (75%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | || | || || |||||||||||||| ||||| || | || | ||||| Sbjct 27 CAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGTCCATC 86 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||||||||||| || | ||||||||||||||| ||||| |||||||| || Sbjct 87 TTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCTTTATC 146 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT---TCAAGGGTAAC 195104 ||| || ||||| || || | |||||| || ||| || || || || |||| Sbjct 147 TTGGATCTTTTGTTTCACACGCGAAATGGTATC---GCTTGCCTCTGTATCTAGAGTAAT 203 Query 195105 CGTCTTTCCTGTCAAAGTTTTTAC 195128 || ||||| || ||||||||||| Sbjct 204 TGTTTTTCCAGTTAAAGTTTTTAC 227 >seq2305 Length=8964 Score = 123 bits (136), Expect = 6e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||||||||||||||| || ||| || | ||||||||| | || || ||||| || Sbjct 1508 TCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAAT 1449 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | |||||||| ||||| || || |||||||| ||||| |||||||| || ||||| Sbjct 1448 ATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTT 1389 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| || || || ||| || ||||| || | || || || ||||| || Sbjct 1388 TCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGTTTTCCCAGTCAATGT 1336 >seq734 Length=33368 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194955 TTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAG 195014 ||| ||||| ||||||| | || | |||||||| || ||||||||||| || || | Sbjct 10500 TTGTATATTATAATCGGATAATGTACGACCATCTTCTAGTTGCTTACCTGCAAATATCAA 10441 Query 195015 TCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| ||||| ||||| |||||||| ||||| |||||| Sbjct 10440 ACGTTGTTGATCTGGTGGAATACCTTCTTTATCTTGTATTTTT 10398 >seq3001 Length=6688 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||||| |||||||||||| | | ||| | |||||| | || || || || | | Sbjct 4432 TCTTTTTCAATATTGTAATCAGACAAAGTGCAAGTATCTTCCAATTGTTTCCCAGCAAGG 4373 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | |||||| ||||| || |||||||| ||||||||| | ||||| || || Sbjct 4372 ATTAAAATTTGTTGACTTGGAGCGATACCTTCTTTTTCTTGAATTCTCTGCTTAACATTT 4313 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 |||| ||||| || | |||| || | ||| |||||| ||| | ||| |||| || Sbjct 4312 TCAACAGTGTCAGACGCTACCACATCCAAGGTGGTCGTCTTGCCTCTTAAATTTTTAACA 4253 Query 195130 AACACTTGCAT 195140 || | ||||| Sbjct 4252 AAAATCTGCAT 4242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109351587478982