Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq769 352 3e-92 seq8698 147 2e-30 >seq769 Length=28997 Score = 352 bits (390), Expect = 3e-92 Identities = 1194/1854 (64%), Gaps = 50/1854 (3%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 || || || || ||||||| || | || | |||| ||||||||||||||||| || Sbjct 13935 TCAACCGTGAATTTAATTGCATCTGCCTTTGGTCTTGTACGTAAATAATACATACCGGTT 13876 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 ||||||||| ||||| |||| || ||||| ||||||||| | || ||| || Sbjct 13875 TTTAAACCTTTTTTCCATGCATAAAAGTGCATGGAGGTTAATTTACCAGTGCTTGGTGCT 13816 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | ||| || | ||| | | |||||| ||||||||| ||||||| | |||||||||||| Sbjct 13815 GCAATGTGTACATTTAAACTTTGACTTTGATCAATATATGCACCACGGTCAGCTGCCATA 13756 Query 47157 TCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTT--TATAAATTTGTTTAATGTCTT 47214 | ||||||| |||| || |||||||| |||| ||||||| | | || |||| Sbjct 13755 TTTAAAATAGTTTTTTGACTAATTTCCCATACCGTTTTGTATAAATCTTTGTA--TTCTT 13698 Query 47215 CTGGGAGATTAG---TATTTTGAATAGATCCTCCgttttctataattttgttttttaatt 47271 ||| | || | |||||||| ||||| || | | ||||||| ||| || | Sbjct 13697 TTGGCAAGTTTGATACATTTTGAACGGATCCACCATCAGCGATAATTTGGTTACGTACAT 13638 Query 47272 catttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAA 47331 | || ||||| ||| || |||| ||| || | ||| |||||| | || Sbjct 13637 CTGGTGTCCAAATATTTAATTTGATTAAATCTTTCAATAAATGTTTGTTAACACATGTAA 13578 Query 47332 ATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCAT 47391 |||| || | ||||| | || | || ||||| || |||||||| | | |||| | Sbjct 13577 ATTCACCGGCAAGTACACGGCGATTGTACATATTGGAAGTGTATGGTTCAAAACATTCGT 13518 Query 47392 TATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTC 47451 | || || | |||||| | || ||||| || ||||| | |||||||| |||| |||| Sbjct 13517 TGTTGCCCATAATTTGCGAGGTAGATGCAGTTGGCATTGGTGCAACTAGTAAGGAGTTTC 13458 Query 47452 TTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAA 47511 |||| |||| || || || | | |||||||||| |||| |||||| Sbjct 13457 TTACACCATGTTCTTTGATATTAGCGCGTAATCCTGCCCAATCCCAACGATCGGATGGAG 13398 Query 47512 CAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTT 47571 || ||||| | ||| ||| | ||||||||| |||| ||| || | ||||||| Sbjct 13397 TGACGTTCCACATATCTGGTTGTAAAATTCCTTTGCTTACTGGACTGCCTTCGTATGTTT 13338 Query 47572 TATAAGGACCGTATAGTTTAGCGAGTTCACA--ACTTGCTTCCAATGCACTATAATATAT 47629 | || ||||| | |||| || |||||| || ||| ||||| | | || || Sbjct 13337 TGTATGGACCAAAACGTTTTGCCTCTTCACATGACGCACTT--AATGCTGCAAAGTAAAT 13280 Query 47630 TGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNN 47689 |||||||| || | | |||| | | | ||| ||| |||||| || Sbjct 13279 CGTTTCAAAGATGTCTTTGTTCAATTGCAATGCAGCTGGGCTTTCAAATGGCATGCGCAT 13220 Query 47690 NNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATT 47749 |||| |||||| || |||||||| || | |||||||||||| || | || Sbjct 13219 CATGATAAATGCATCTGCTAAACCTTGAACTCCTAAACCAATTGGTCTGTGTCTCAAGTT 13160 Query 47750 AGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNN 47809 ||| | ||||||||| || || || |||| ||| |||| ||| | | Sbjct 13159 GGAATATTCAGCTTCTTTTACCGGGTAGAAATTTACATCAATAACACGATTCAAATTGAT 13100 Query 47810 NNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAAT--CAAACTTG-TTAT------- 47859 ||||| || ||| | | |||| ||||| | || | Sbjct 13099 AGTGACTTGTCTTACAATGTCAAATAACATTTGGAAATTGTAAACTGGCTTGTCCTCGTC 13040 Query 47860 --TTATAACAAACCTATTAAGT--GC-TATAGATGCTAGATTACATACAGCTACCTCATT 47914 | || | | | | || || || |||||||||| ||||| ||||| | |||| Sbjct 13039 GCTCATGTCCACCATTTTTGGTAAGCAGATAGATGCTAAGTTACAAACAGCAATTTCATC 12980 Query 47915 TGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATT 47974 || |||||||| || || |||| |||| ||||| || ||| || || ||||| || Sbjct 12979 AGGTGCAGTATATTCGATGATCTCAGTGCATAAATTACTACTTTTAATCGTTCCCAAGTT 12920 Query 47975 TTGATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTT 48032 ||| ||||| ||| |||||||| || ||||| | ||| | || || || ||| Sbjct 12919 TTGTTGATTGGATTTACG--ATTACATGCATCTTTGTACAACATGTATGGCGTACCTGTT 12862 Query 48033 TCTATCTGAGATTCAATGATAGATTTCCAAAC---AGTCCTAGCCTTTATAACAGCTCT- 48088 || | ||| ||||||||| ||| |||| | | || | | || | ||| Sbjct 12861 TCAACTTGACTTTCAATGAT---TTT--AAACCATAATTCTTGTGCACGT-ACGGTTCTG 12808 Query 48089 --AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACA 48146 | | || || | ||| |||| | || || || |||| || || || Sbjct 12807 TAACCCTTGCCTTCTTTTTCATATTGATGGTACAATGCTTCGAATTTCTCACCCCACGTC 12748 Query 48147 TTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACT 48206 | || || || | |||| || || | ||||| ||| | |||| || ||| Sbjct 12747 TCATGCAAATCACGTGCAACATTTGGGCAAAACAATGTCCATTGTCCATCTGCTTGTACA 12688 Query 48207 CTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTC 48265 | |||| |||| |||||| ||||| | || ||| || ||||| | | | | | Sbjct 12687 CGTTTCATGAATAAATCTGGAATCCACATTGC-ATAGAACAAATCGCGTGCACGTGCATT 12629 Query 48266 TTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTC 48325 ||||| ||| ||| ||||||| || | ||| || | | |||||||||||||||||| Sbjct 12628 TTCATCACCATGATTTTTTTTAAGATCTAAAAACTCGAAGACATCAGCATGCCATGGTTC 12569 Query 48326 TAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGT 48385 || || || || | |||| || |||| || ||||| |||| || | || || Sbjct 12568 CAAGTAAATAGCAAAAGAACCTTTTCTTTTACCGCCACCTTGGTCTACGTAACGTGCGGT 12509 Query 48386 ATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAAT 48445 || || | ||||| | |||||||||||| ||||| | ||||| || || || Sbjct 12508 ATCATTGAATACTCTCAGCATTGGGACAATTCCATTACTTGAGCCATTTGTACCGCGGAT 12449 Query 48446 ATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGA 48505 ||||||||| || | || || || | || |||||||| || |||| Sbjct 12448 GTAACTTCCAGTACTACGGATGTTGTGAACACTCAATCCAATACCACCAGCATATTTACT 12389 Query 48506 TATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATT 48565 ||| | ||||| ||| | ||||||||||| ||| | || ||||||| |||| Sbjct 12388 GATTTGCGCACAAGATTTTAACGTATCATAAATACCTCCAATGGAATCATCTTTCATTGC 12329 Query 48566 TAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGA 48625 | | ||| || | || ||| || | || || | ||| || ||||| || | Sbjct 12328 AACCAAAAAGCATGATGCCAATTGTGGGCGTGGGGTACCAGCATTGAACAATGTCGGCGT 12269 Query 48626 TGCATGAATAAAC--CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATA 48683 |||||| ||||| ||||| || || ||| | ||||| |||| || || ||| Sbjct 12268 TGCATGGGTAAACATCATTTTACTCAT--CAAATCGTATGTGATAATAGCACTGTCGATA 12211 Query 48684 TC-CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAAT 48742 || | ||| || ||||| | | |||||||| | ||||| ||| |||||||||||||| Sbjct 12210 TCTTCCTTG-TGAATACCAACTGCAACACGCATAATCATATGTTGTGGTCTTTCAACAAT 12152 Query 48743 TTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 || |||||||||||| | ||||| ||| | ||||| |||||||| || Sbjct 12151 TTCACCATTTATTTTCAACAAATATGCACGTTCTAGCGTTTTGAAACCAAAGTA 12098 Score = 100 bits (110), Expect = 3e-16 Identities = 195/283 (69%), Gaps = 5/283 (2%) Strand=Plus/Minus Query 48938 TTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGT 48997 |||||| | || || ||||| || | |||||||| | | | |||||||||| || Sbjct 11929 TTTATGCAAGTTTGACATAGAAATACGTGCAGCTAACGTGGAAAAATCTGGATGTTGCGT 11870 Query 48998 TGTACATGTACT-AGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTG 49056 | |||||||| || |||| ||||| ||| ||| ||||| || ||||| |||| Sbjct 11869 AG-ACATGTACGCAGCAGTTTCAGCTGCCAATTCATCCAATTCCGACGTTGTTACTCCTG 11811 Query 49057 TATATATTCCTTGAATAACTTTCATTGCTATATTTACTGGATCTATATGATCCATATCCA 49116 |||| ||||| | |||||| ||| || ||| || || || || ||| | Sbjct 11810 GGTATACACCTTGTACAACTTTTTGTGCAATCAATACAGGTTCAATGAAATTTTCATCTA 11751 Query 49117 GTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAACATTATATTCTCTTTAC 49176 ||||| |||||||||| || | ||||||||||||||| || ||||| Sbjct 11750 AACCATAGCATAATTTTTCAATACGTTTTGTAATTTTATCAAAATGTACTGGTTCTTTTT 11691 Query 49177 GACCGTCACGTTTTATAACAAACATCTTTACTATAAAAATATA 49219 ||| ||||||||| ||||||||||||| || ||| ||||| Sbjct 11690 TACCACCACGTTTTACAACAAACATCTTT--TA-AAATATATA 11651 >seq8698 Length=1787 Score = 147 bits (162), Expect = 2e-30 Identities = 604/941 (64%), Gaps = 31/941 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATTCATTACTCCCATTTT 18671 |||||||||| |||||||||||| | ||||| | | | || | ||| || Sbjct 852 TTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACT-TACACCAACACCAGCTT 910 Query 18672 TTGA-TATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATT 18730 |||| |||||| | || | ||||||||| || || ||||| || | || || || || Sbjct 911 TTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCATTT 970 Query 18731 CCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTA 18790 |||| |||| ||||| || | |||| || ||||| | |||||| || || | Sbjct 971 CCATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACCTAATGCTTGTAACA 1030 Query 18791 GTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATT 18850 | ||| || |||| ||| ||| | ||||| | ||||| || || |||| Sbjct 1031 AACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCAATCAATT 1090 Query 18851 TAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTAC-----TGCCTCTGATAT 18905 ||| |||| || | | | |||| ||| ||| || | || |||| |||| Sbjct 1091 CAACTGGTAATGATTGGGAGACAAATACTTTTTCGATTTCAACCGCATTGCCGATGATTG 1150 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGC 18965 ||| || || | | | | || || | ||| ||| | | || ||||| Sbjct 1151 AATGAATCGTTTCCTCTGGTAA--ACGATTTACTAAATGATCTTTGTATAATAAGCATGC 1208 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||||||||||| | || || || | |||||||| || ||||| |||||| || Sbjct 1209 GAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAAACCTGG 1268 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||||| || | |||||||||||| || | | | || || ||| ||||| ||||| Sbjct 1269 CATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAGAAGATACC 1328 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCC 19144 ||| || || || ||||| | | ||| | ||| | || | | | ||| Sbjct 1329 TTCACACGCAGCGAATGCAACGACGCGCTCTGCG-AACGATGCGTTGTCTGCGTTGGTCC 1387 Query 19145 ATTTCAGTGCCCAATCAGCCTTCTTTTTTACA-CATGGCATTGTCTCTATAGAATTAAAT 19203 | || ||| || || || | ||| || ||| | ||||| || |||| ||| || Sbjct 1388 AACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCG-ATTGTATCAATAGCATTCAA- 1445 Query 19204 AGATACATACGC---TCATCTGTATCTTTAACA---TATGCATCTATCAATAAACTGTAC 19257 || |||| | |||| | | ||| | || | ||||| || || ||| Sbjct 1446 -----CAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAATAC 1500 Query 19258 ATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTT 19317 | ||||| |||||||||||| ||||| || ||||| || || ||||| | |||||| | Sbjct 1501 ACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCAGGC 1560 Query 19318 ATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCT 19377 | || ||||| | |||| | | ||||||||| || || || || || || Sbjct 1561 ACTTGCACTTCGTTGGAAAAGTTCATCAACAAATTTTCGTTTACAATACCGTCGGATGCA 1620 Query 19378 GCAAAAAATGCTAATACATGTTTAATAA---AATGTTTTTCATCTGAGGTTAATGTATTC 19434 || |||||||| ||||| | |||| | || ||| | ||| | | | | ||| | Sbjct 1621 GCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATC---GCTCATTTTATCC 1677 Query 19435 CAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCT 19494 ||||| || ||||| | || |||| ||||| | ||||| ||||| || || ||| Sbjct 1678 CAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAGCT 1737 Query 19495 TTTTTATACATGTTCCATATATCACGATATTGTATAGGAAA 19535 ||||||||||| | ||| |||||| || ||| || || || Sbjct 1738 TTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAA 1778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562044536911440