Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq8698 178 2e-39 seq2390 102 1e-16 >seq8698 Length=1787 Score = 178 bits (196), Expect = 2e-39 Identities = 612/938 (65%), Gaps = 21/938 (2%) Strand=Plus/Plus Query 36825 TTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCATT 36884 ||||||||||| ||| || | ||||| | || | | ||| | || | ||| Sbjct 850 TTTTAAAAATCACAATCCAAAGAAAATTGTTGATCTTCTTCACT-TACACCAACACCAGC 908 Query 36885 TTTTGA-TATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATT 36943 |||||| ||||| || || ||| |||| ||||| || || || |||| | || || | Sbjct 909 TTTTGAATATTCGCCTACACGTTTTTCAAAAAAGTTGGTTTTACCTTGCAAGGAGATCAT 968 Query 36944 TTCCATAAAATCAAATGGATTAGATGTATTATATATAGTAC-TACATGATAATTCCTTCA 37002 |||||| |||| ||||| || |||| ||| || || || |||| |||| | | | Sbjct 969 TTCCATCCAATCGAATGGGTTGGATGCATTGTACATTTTAGATACACC-TAATGCTTGTA 1027 Query 37003 GAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTA 37062 | | ||| || ||||| ||||||| ||||| | | |||| || ||||| | Sbjct 1028 ACAAACGATCAGCGCAGAATTCAATGTATTGGCACATCAATGTTGAGTTCATGCCAATCA 1087 Query 37063 GTTTTACTGGAATTGCATCTTGA-AGAAATAGTTTTTCTATTATTACAGCATCTTTAACT 37121 || ||||| | || || || | ||||| |||||| ||| || |||| | | Sbjct 1088 ATTCAACTGGTAATG-ATTGGGAGACAAATACTTTTTCGATTTCAACCGCAT---TGCCG 1143 Query 37122 AT-ATTAAC--AATAACTTCTTCAGTTGGGGGATATTTTAAATA---TTTAAACAATAAA 37175 || ||| | ||| ||| || | | ||| | ||||| ||| | ||||| Sbjct 1144 ATGATTGAATGAATCGTTTCCTCTGGTAAACGATTTACTAAATGATCTTTGTATAATAAG 1203 Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 ||||| ||||||||||| ||||||||||| | |||||||| || ||||| ||| Sbjct 1204 CATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAAAAACATAAA 1263 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 |||||||| | ||| | |||||| | |||||| | || || || ||| ||||| Sbjct 1264 CCTGGCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCACTGAAGAAG 1323 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTAC--CGAAAGTTGAACTATAATCAG 37353 ||||||||| || || ||||| || |||| | | |||| | || | | | Sbjct 1324 ATACCTTCACACGCAGCGAATGCAAC--GACGCGCTCTGCGAACGATGCGTTGTCTGCGT 1381 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 |||| ||| ||||| ||| ||| || || ||||| ||||| || | Sbjct 1382 TGGTCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCGATTGTATCAATAGCAT 1441 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | || | | |||||||| || || || ||||| || |||| || ||||| Sbjct 1442 TCAACAAACGCGTTTTTTCTGGACCATTACGAATGTAAGTGTCTATTAACAAGGAATACA 1501 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 ||| | ||||||||||| ||||| || ||||| ||||| ||||| | ||||||| | Sbjct 1502 CTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCTTCAGGCA 1561 Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593 ||| || ||||| |||| || | || ||||| || || || || || || | Sbjct 1562 CTTGCACTTCGTTGGAAAAGTTCATCAACAAATTTTCGTTTACAATACCGTCGGATGCAG 1621 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTT-TTCCAA 37652 | || || || | || | | || || | | ||| | | | | | ||||| | |||| Sbjct 1622 CGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTA-TCGCTCATTTTATCCCAA 1680 Query 37653 TCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGCACGT 37712 || || ||||| || || || | || || | ||||| ||| ||| || | Sbjct 1681 TCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCTTCAGCTTTT 1740 Query 37713 TTATACATCGTCCAAATATCATTATGTTGTATTGGAAA 37750 |||||||| |||||||||||||||||| ||||| || Sbjct 1741 TTATACATTTGCCAAATATCATTATGTTGAATTGGGAA 1778 >seq2390 Length=8212 Score = 102 bits (112), Expect = 1e-16 Identities = 139/189 (74%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 34811 ATATCGAAATATTTTTCAAAAATTATCTGCGCAACTCTTTCACC-CTTTGAAATATAAAA 34869 |||| ||||| |||||| ||||||| || |||| ||| ||||| | || || | ||| Sbjct 769 ATAT-GAAAT-TTTTTCCAAAATTAATTGTGCAATTCTGTCACCTCGTTTAACTTGTAAA 712 Query 34870 TGTTGATTCTCCATTATTAATTACGATAATACCAATATTACCTCTGTAATCCCTATCTAT 34929 | || ||| |||| |||| || | || |||| ||| || | |||||| ||| || Sbjct 711 TCTTC-TTCCCCATGGTTAAATAAAACAACTCCAACATTTCCACGATAATCCGCATCAAT 653 Query 34930 AACACCTCCACCTATATCAATGTATTTATTCAAAGACAAACCTGATCTTGCAGCTATCCT 34989 |||||| | || | |||||||| ||| ||| | | |||||||||||||| || || || Sbjct 652 AACACCAGCGCCGACATCAATGTGTTTTTTCCATGCCAAACCTGATCTTGGCGCAATTCT 593 Query 34990 ACCATAACA 34998 |||||| || Sbjct 592 ACCATAGCA 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592249083381840