Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq810 178 1e-39 seq2305 165 6e-36 seq775 149 5e-31 seq734 149 5e-31 seq6389 143 2e-29 seq4707 131 1e-25 seq4160 131 1e-25 seq3001 131 1e-25 >seq810 Length=26514 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | |||||| |||||||| | || | ||||||||| || ||||| || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||||||| ||||||||||| || | ||| |||||||| || ||| Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||| |||||||| ||||||||||| |||| | ||| ||||| | ||| || Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| |||| ||||| || || ||||||||||| || || |||||| Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATG 7515 >seq2305 Length=8964 Score = 165 bits (182), Expect = 6e-36 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | ||| | |||||||||||| | || | ||||||||| |||||||| || Sbjct 1544 CCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACTA 1485 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||||||| || ||||||||||||||||| |||||||| || || Sbjct 1484 AGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGGG 1425 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| ||||||||||| || |||| | ||| ||||||| ||| || Sbjct 1424 ATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTACA 1365 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 ||||| |||| ||||| || || || || Sbjct 1364 TCAAGCGTGATGGTTTTCCCAGTCAATGT 1336 >seq775 Length=28483 Score = 149 bits (164), Expect = 5e-31 Identities = 130/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| |||||||| ||||||||||| || | ||| |||||||| || ||||| ||||||| Sbjct 10620 CATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTT 10561 Query 101373 TATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGA 101432 | ||||| || |||||||| || |||| | ||| ||||| | ||| || |||||||||| Sbjct 10560 TGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGA 10501 Query 101433 CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTA 101474 ||||| || || || |||||||| || || |||||| ||| Sbjct 10500 TGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATGATTA 10459 Score = 100 bits (110), Expect = 2e-16 Identities = 102/132 (77%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 |||||| | |||||| | |||||||| | ||| | ||||||||| ||||| ||||| | Sbjct 10826 TCCTCCACGTAAACGAAGTACTAAATGTAAGGTTGCTTCTTTTTGGATATTATAATCAGA 10767 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | |||| |||||||| ||||||||||| || | ||| |||||||| || || Sbjct 10766 AAGGGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGG 10707 Query 101362 AATG-CCTTCTT 101372 |||| || |||| Sbjct 10706 AATGTCCATCTT 10695 Score = 82.4 bits (90), Expect = 6e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 101313 CATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTT 101372 |||| |||||||| ||||||||||| || | ||| |||||||| || ||||| ||||||| Sbjct 10700 CATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTT 10641 Query 101373 TATCTTGAATTTTTT 101387 | ||||| || |||| Sbjct 10640 TGTCTTGGATCTTTT 10626 >seq734 Length=33368 Score = 149 bits (164), Expect = 5e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | |||||||| |||||||| | | ||| | ||||||||| ||||||| Sbjct 10541 CCTCCACGCAAACGTAATACTAAATGCAATACGGCTTCCTCTTGTATATTATAATCGGAT 10482 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||||||||||||||||||||| |||||||| || ||| Sbjct 10481 AATGTACGACCATCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTGGA 10422 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| |||||| |||| | |||| | || || | | || Sbjct 10421 ATACCTTCTTTATCTTGTATTTTTAATTTTGTATTTTCAATTGTATCTGTTGAAGGAACA 10362 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATC 101464 |||||||| ||||| || || || ||||||||||||||| Sbjct 10361 AAAAGAGTGATGGTTTTACCAGTCAAGGTTTTTACAAATATC 10320 >seq6389 Length=961 Score = 143 bits (158), Expect = 2e-29 Identities = 165/219 (75%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| ||||||||||| | |||||||||||||| ||||| ||||| || Sbjct 13 CCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCT 72 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || ||||| |||||||| |||||||| || ||||| || || ||| Sbjct 73 AATGTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGA 132 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || |||||||||||||| || |||||||| ||| | | | || | || || || Sbjct 133 ATCCCTTCTTTATCTTGGATCTTTTGTTTCACA--CGCGA-AATGGTATCGCTTGCCTCT 189 Query 101423 ---TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458 || ||||| | ||||| || ||||||||||||||| Sbjct 190 GTATCTAGAGTAATTGTTTTTCCAGTTAAAGTTTTTACA 228 >seq4707 Length=625 Score = 131 bits (144), Expect = 1e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | |||||| || |||||||||||||| | ||||||||| ||||| ||||| | Sbjct 402 CCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAA 343 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| |||||||| ||||| ||||| || | ||| |||||||| || ||| Sbjct 342 AGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGA 283 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTAC 101394 || |||||||| ||||| || ||||| || || Sbjct 282 ATTCCTTCTTTGTCTTGGATCTTTTGCTTGAC 251 >seq4160 Length=5066 Score = 131 bits (144), Expect = 1e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||||||| || ||| |||||||||| |||||| | || || || |||||||| Sbjct 1022 ATCTTCCAATTGTAGTCCCGCATATATCAAACGTTGTTGACCTGGAGGGATACCTTCTTT 963 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||| ||||||||||||| | || | | || ||||| | ||| || |||||||||| Sbjct 962 ATCTTGTATTTTTTGTTTTATATTTGCAATTGTATCAGATGGTTCTACATCAAGAGTGAT 903 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAA 101460 ||||| || ||||||||||| ||||| Sbjct 902 GGTTTTACCAGTTAAAGTTTTAACAAA 876 >seq3001 Length=6688 Score = 131 bits (144), Expect = 1e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 101278 TTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAA 101337 |||||||| ||||||||||| | | ||| | | ||| |||||||| || || |||| Sbjct 4433 TTCTTTTTCAATATTGTAATCAGACAAAGTGCAAGTATCTTCCAATTGTTTCCCAGCAAG 4374 Query 101338 TATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAAT 101397 || ||| |||||| || | || |||||||| ||||||||| | || || ||| | Sbjct 4373 GATTAAAATTTGTTGACTTGGAGCGATACCTTCTTTTTCTTGAATTCTCTGCTTAACATT 4314 Query 101398 TTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTAC 101457 ||| ||||||||||||| | |||| || | ||| ||| ||||| ||||| |||| || Sbjct 4313 TTCAACAGTGTCAGACGCTACCACATCCAAGGTGGTCGTCTTGCCTCTTAAATTTTTAAC 4254 Query 101458 AAATATCTGCAT 101469 ||| |||||||| Sbjct 4253 AAAAATCTGCAT 4242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396234228085122