Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1358 102 2e-16 seq1601 87.8 4e-12 >seq1358 Length=20090 Score = 102 bits (112), Expect = 2e-16 Identities = 132/182 (73%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 150380 ACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGAC 150439 || ||||| ||| | ||| |||||||||||||||||||||||||| || || || Sbjct 6111 ACAAAAAACAATCCAGTCTTAATTGGTGAACCAGGTGTTGGTAAAACAGCTATTGTCGAA 6170 Query 150440 GGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAATT 150499 || ||||| ||||| || | | |||||||| || || | | |||| |||| | Sbjct 6171 GGTTTAGCTCAACGTATTGTTGCAGGTGATGTCCCTGAAAATTT---AGATTGTGAATTA 6227 Query 150500 CTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAA 150559 |||| || ||||||||||||| | ||| ||| | || ||| |||||||| ||||| Sbjct 6228 TTTTCCTTAGATATGGGTGCATTAATTGCAGGTGCGAAACATCAAGGTGAATTTGAAGAG 6287 Query 150560 CG 150561 || Sbjct 6288 CG 6289 >seq1601 Length=13332 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 73811 TTTCACTGAATTTTCGTATCAAATTCTTCAAGCAATGGACTTTGAATATTTGTACGA-AA 73869 |||||| |||||||| |||||||| ||||||| || ||| | |||| || | || Sbjct 2962 TTTCACGGAATTTTCATATCAAATGTTTCAAGCCCATGATTTTTATCATTTATATAACAA 3021 Query 73870 TGAATAACTGCAAAATCCAAATTGGTGGTTCTGACCAATGGGGTAATATGATTGCTGGAA 73929 |||| || || | | | |||||||||||| ||| |||||||||||||| |||||||| Sbjct 3022 TGAA-AATTGTATATTGCAAATTGGTGGTAGTGATCAATGGGGTAATATAGTTGCTGGAT 3080 Query 73930 TTGATTTGAT 73939 ||| || || Sbjct 3081 GTGAATTAAT 3090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147455921770708