Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq888 376 3e-99 >seq888 Length=1579 Score = 376 bits (416), Expect = 3e-99 Identities = 501/696 (72%), Gaps = 0/696 (0%) Strand=Plus/Minus Query 164929 TAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTATCCGTCCTTACA 164988 |||| || || ||||| || || ||||| | |||||| | || ||||| |||| Sbjct 1577 TAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACA 1518 Query 164989 ATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCAC 165048 | || ||||||||||| | |||||||||||| || || || |||||||| ||||||| Sbjct 1517 ACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCAC 1458 Query 165049 TGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCC 165108 | || ||||| | ||||| || || || || || || || || | ||| || | || Sbjct 1457 TTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTA 1398 Query 165109 TGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTG 165168 | | ||| | ||||| |||||||||||||| || |||| ||||| ||||||||||| | Sbjct 1397 TCCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAG 1338 Query 165169 CAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACAT 165228 | || | | |||| |||| | || | ||| ||||| || | ||||| ||||| ||| Sbjct 1337 CTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACAC 1278 Query 165229 TATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAG 165288 | | ||| ||||| || |||| || || |||||| | | ||||| | |||| Sbjct 1277 TTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAG 1218 Query 165289 AGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTT 165348 ||||||| || ||||| || || ||||| |||||||| ||||| ||||| | || || | Sbjct 1217 AGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCT 1158 Query 165349 CTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACAT 165408 | |||||||| |||||||| || |||||| | || || ||||| | || | |||| | Sbjct 1157 CAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGT 1098 Query 165409 CCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGG 165468 | | |||| || |||| | || ||||| ||||| ||||||||||| || | Sbjct 1097 CAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAG 1038 Query 165469 AGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGA 165528 ||||| | || || |||||||| || ||||| || |||||||| || || || || | | Sbjct 1037 AGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTA 978 Query 165529 ATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCC 165588 | ||||| | ||||| ||| ||||| || ||||| || ||||||||| || | |||| Sbjct 977 ACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCC 918 Query 165589 CAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | || || ||| | || | || ||||| ||||||| Sbjct 917 CTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAAT 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563145211062480