Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq888 387 1e-102 >seq888 Length=1579 Score = 387 bits (428), Expect = 1e-102 Identities = 492/677 (73%), Gaps = 0/677 (0%) Strand=Plus/Minus Query 10136 TTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTAC 10195 |||||||| |||||| | || || ||||| | || | | | ||| || || ||| Sbjct 1578 TTAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTAC 1519 Query 10196 AATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCA 10255 || || || ||||| || | ||||||||||| || || ||| ||||| || || ||| Sbjct 1518 AACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCA 1459 Query 10256 CTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTC 10315 || |||||||| | ||||||||||| || ||||| || || | |||||||| || Sbjct 1458 CTTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTT 1399 Query 10316 CTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTT 10375 | || ||| |||| || || || || ||||| || || | ||||| |||||||| || Sbjct 1398 ATCCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTA 1339 Query 10376 GCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACA 10435 ||||| |||| |||| || || || | ||||| ||||| | || |||||||||||| Sbjct 1338 GCTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACA 1279 Query 10436 CTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAA 10495 |||| ||||||| || ||||||| ||| || ||| | || |||| ||| Sbjct 1278 CTTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAA 1219 Query 10496 GAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTT 10555 ||||| || || ||||| || ||||||||||||||||| ||||| || || | || || Sbjct 1218 GAGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTC 1159 Query 10556 AGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACC 10615 || || || |||||||| ||||| ||||| || |||||||| | || | |||| Sbjct 1158 TCAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATG 1099 Query 10616 TCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAA 10675 || | |||| | |||| | || || || ||||| |||||||| ||||| ||| Sbjct 1098 TCAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAA 1039 Query 10676 GAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTCTG 10735 |||||| | || | ||||||||||| ||||| || ||||| || |||||||| ||||| Sbjct 1038 GAGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTT 979 Query 10736 AACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGCTTTGTTTTC 10795 ||||||||| ||||||||||||||||| | || || ||||| |||| | |||| ||| Sbjct 978 AACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTC 919 Query 10796 CCAGAAGAAGTTCTTCC 10812 || || || || ||||| Sbjct 918 CCTGAGGAGGTACTTCC 902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516420953424000