Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq810 104 2e-17 seq4707 98.7 8e-16 seq775 96.9 3e-15 >seq810 Length=26514 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||| || || ||||||||||| ||| || ||||| || Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | || ||||| || |||||||| ||| | || ||||||| Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 28731 || | ||||||||||| || ||||||||||||||| | | ||| | || || | Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAG--TGACTACA 7693 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGG 28781 |||| ||||||||| | ||| | || | |||||| | | || |||||| Sbjct 7694 ACATCCAAAAAGAAGCAACTTTACATTTAGTATTACGTCTTCGTGGAGGG 7743 >seq4707 Length=625 Score = 98.7 bits (108), Expect = 8e-16 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 28630 TCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTG 28689 |||||||||| ||| |||||||| ||| | || ||||||||| | |||||||||| Sbjct 252 TCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTTTG 311 Query 28690 CGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTA 28749 | || ||||||||||||||| ||| | | |||||||| || ||||||||| | | Sbjct 312 CTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGCAA 371 Query 28750 CTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 | || || | ||||| | ||||| || || || Sbjct 372 CCCTTCATTTAGTATTGCGTTTACGTGGTGGTAT 405 >seq775 Length=28483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || ||||||||||| || ||||||||||| || || ||||| || Sbjct 10464 ATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCT 10523 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | || ||||| ||| |||||||| ||| | || ||||||| Sbjct 10524 GATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 10583 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGAT 28709 || | ||||||||||| || ||||||||||||||| Sbjct 10584 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGAT 10619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425357381456334