Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq769 188 4e-43 >seq769 Length=28997 Score = 188 bits (208), Expect = 4e-43 Identities = 311/439 (71%), Gaps = 11/439 (3%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT--CATTTCTTCT 25990 ||| |||||||||||||||||||||||||| || ||||| | || | ||||| || Sbjct 12682 CATGAATAAATCTGGAATCCACATTGCATAGAACAAATCGCGTGCACGTGCATTT--TCA 12625 Query 25991 TTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAA 26050 | || ||||| ||||| |||||||| || || || | ||| | ||||||||||| || Sbjct 12624 TCACCATGATTTTTTTTAAGATCTAAAAACTCGAAGACATCAGCATGCCATGGTTCCAAG 12565 Query 26051 TAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCA 26110 || ||||||||| |||||||||||| || |||||||| |||||||| | ||| || ||| Sbjct 12564 TAAATAGCAAAAGAACCTTTTCTTTTACCGCCACCTTGGTCTACGTAACGTGCGGTATCA 12505 Query 26111 TTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTG 26170 ||||| ||| ||| |||||| || | |||| | | || ||||| | | || | Sbjct 12504 TTGAATACTCTCAGCATTGGGACAATTCCATTACTTGAGCCATTTGTACCGCGGATGTAA 12445 Query 26171 GATCCTGTCGATCTAATATCGTGAGCA-TGAATACCGATTCCACCAGCCCATTT--TGAA 26227 ||| || | || | |||| || | ||| || || |||||||| |||| || | Sbjct 12444 CTTCCAGTACTACGGATGTTGTGAACACTCAAT-CCAATACCACCAGCATATTTACTG-A 12387 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 | || |||||| | | ||||| |||| ||| ||| |||| |||||||| | Sbjct 12386 TTTGC-GCACAAGATTTTAACGTATCATAAATACCTCCAATGGAATCATCTTTCATTGCA 12328 Query 26288 AATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTA 26347 | ||||| || || | ||||| | | | || || | ||| || |||||||| || Sbjct 12327 ACCAAAAAGCATGATGCCAATTGTGGGCGTGGGGTACCAGCATTGAACAATGTCGGCGTT 12268 Query 26348 GCATGAGTATAATATCCTT 26366 ||||| ||| || ||| || Sbjct 12267 GCATGGGTA-AACATCATT 12250 Score = 82.4 bits (90), Expect = 4e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 25049 TTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTT 25108 || |||||| |||||||||||||||| || || || | ||||| || |||||||| ||| Sbjct 13545 TTGGAAGTGTATGGTTCAAAACATTCGTTGTTGCCCATAATTTGCGAGGTAGATGCAGTT 13486 Query 25109 GGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATT 25148 |||||| ||| | || || || ||||| | ||||| || Sbjct 13485 GGCATTGGTGCAACTAGTAAGGAGTTTCTTACACCATGTT 13446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253011794421950