Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq888 336 3e-87 seq3564 143 3e-29 >seq888 Length=1579 Score = 336 bits (372), Expect = 3e-87 Identities = 504/715 (70%), Gaps = 23/715 (3%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||| | || || || |||||||||| || ||||| || || Sbjct 883 TTAAAGAGCGTTTCCACGTGGAAGTACCTCCTCAGGGAATACAAGGTTTTCATGTGGCTG 942 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || || ||||||||| | || ||||| ||||||||||| ||||| || ||||| Sbjct 943 ATCTTGAGCTGCCATCCATGCACGAATACCTTCGTTAAGAAGAATATTCTTTGTGTAGAA 1002 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 || || ||||| || ||||| || || | |||||||| ||||| || |||||||| | Sbjct 1003 TGTTTCAAACTCAGGATCTTCAGCAGCACGGATCTCTTGCGATACGAAATCGTATGCACG 1062 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||||| ||||| || || | ||| | | ||| |||| | || | ||||| || Sbjct 1063 GAGGTTACATGCTAATCCAACAACACCAAGTGCTGACATCCATAATCCTGTTACAGGTAC 1122 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 ||| | ||| | |||||| | | | ||||| || ||||| | ||| || |||||||| Sbjct 1123 GAAAAGCATGAAGAAGTGAAGCCAACGCTTGTTTGAGAATGCTACACCGAAAATCTGTGA 1182 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 |||||| | ||| ||||| | ||| ||||| ||||| | ||||| || | || || Sbjct 1183 CCAGAAACGGTTAGCTGTTACCATTGAGTAAGTCTCTTCAGCTTGTGTTGGGTTAAACGC 1242 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| || | |||| ||| ||| | ||||| | | ||| Sbjct 1243 ACGGAATGT----GTTTGA-----ACCATCACCA------------TCTTCGAAAAGTGT 1281 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 ||| | ||||||||||| ||||| ||||| || | |||| | || |||| ||| || || Sbjct 1282 GTTTTCTACTGTTGCACCGTGAATTGCACAAAGAAGTGCTGCTCCAAGTACTCCAGCTAC 1341 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||||||| ||| | || | ||| ||||||||| ||||| | ||| | |||| | Sbjct 1342 ACCCATCATGTGGAATTGGTTAAGTGTCCAGTTGTGGAACCCTTGGAAGAAAAGGATAAA 1401 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||| || ||| | || ||||||||||| ||||| |||||||| | ||| || ||||| Sbjct 1402 ACGGAAAATTCCAGCTACACCGAATGAAGGTGCAAAGAACCATCCTGACTGTCCAAGTGG 1461 Query 123466 ATAGATCAGAAAGA-TGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGT 123524 || || || || | | || ||| || || ||| ||| ||||| || | |||||||| Sbjct 1462 GTAAATAAGGAATACAGATA-CGAATACAGCAATAGGAGCTGAGAACGCAATTGCGTTGT 1520 Query 123525 AAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTAT 123579 | || | ||| ||| | ||| || |||||||| | ||||| || || || Sbjct 1521 ACGGACGAATTTGTACTGCACGTGCAATTTCAAATTGACGAAGCATAAATCCGAT 1575 >seq3564 Length=5900 Score = 143 bits (158), Expect = 3e-29 Identities = 274/400 (69%), Gaps = 4/400 (1%) Strand=Plus/Minus Query 138173 ATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAA 138232 ||||||||| |||||||| | || || || ||||| ||||| |||||||||||||| || Sbjct 3358 ATGTTTTGCAACACCAATGGATCCAACTCCTGGACCACCACCACCATGTGGAATACAAAA 3299 Query 138233 TGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACC 138292 ||| ||||||||||| | ||||||||| ||||| ||| | || || | || || Sbjct 3298 TGTTTTATGTAAATTCAAATGACATACGTCTGCGCCAATTTTACCAGGACTACATAATCC 3239 Query 138293 TACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGAT 138352 ||| || ||||| | |||||| ||||| | ||||| || ||||| ||||| | | Sbjct 3238 TACTTGAGCATTCATATTTGCCCCATCCATGTATACTTGTCCACCGCGACTATGAATGGT 3179 Query 138353 CTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCA- 138411 | | || | || | ||||| ||||||| || |||||||| || | || Sbjct 3178 ATCAATAATTTCAACAATACCTTCCTCAAACACACCATATGTTGATGGATACGTTACCAT 3119 Query 138412 TAATACA-TGAGAGTTCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCT 138470 ||| || ||| | ||| || | |||||| | || ||| | || || Sbjct 3118 TAAGGCACCTAGATTATCTTTGTGTT--TCTCTGCTTTTGCTTTTAAATCATCTATATCA 3061 Query 138471 ATGTTGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTA 138530 | || || ||||||| || ||| || |||||||| ||||||||||| ||||| Sbjct 3060 ACATTTCCTAATTCATCACTTTTCACAGTAACGACTTTCATACCTGCCATGACGGCACTT 3001 Query 138531 GCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATA 138570 || ||||| || ||||| ||||| ||| |||| |||| Sbjct 3000 GCTGGATTTGTACCATGAGCTGATAATGGAATCAAGCATA 2961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578932206007920