Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq888 363 2e-95 seq2286 239 6e-58 seq1642 165 1e-35 >seq888 Length=1579 Score = 363 bits (402), Expect = 2e-95 Identities = 500/698 (72%), Gaps = 6/698 (1%) Strand=Plus/Plus Query 23385 AATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCA---ATTACAGGAAAGTTTTCGTGT 23441 ||| ||||||| || || | |||||| | |||||| | |||| | |||||| ||| Sbjct 881 AATTAAAGAGCGTTTCCACGTGGAAGTACCTCCTCAGGGAATACAAG---GTTTTCATGT 937 Query 23442 GGTTGGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTG 23501 || || || || ||||||| |||| | || | ||| | | |||||| || ||| Sbjct 938 GGCTGATCTTGAGCTGCCATCCATGCACGAATACCTTCGTTAAGAAGAATATTCTTTGTG 997 Query 23502 TAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAA 23561 ||||| || ||| || | ||||||||||||||| |||||||| || ||||| || Sbjct 998 TAGAATGTTTCAAACTCAGGATCTTCAGCAGCACGGATCTCTTGCGATACGAAATCGTAT 1057 Query 23562 GCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACA 23621 ||||| || ||| || | |||| | |||| | || | ||| | || | ||| Sbjct 1058 GCACGGAGGTTACATGCTAATCCAACAACACCAAGTGCTGACATCCATAATCCTGTTACA 1117 Query 23622 GGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATT 23681 || || || | ||| |||||||| | ||||||||| || || || || ||||| || Sbjct 1118 GGTACGAAAAGCATGAAGAAGTGAAGCCAACGCTTGTTTGAGAATGCTACACCGAAAATC 1177 Query 23682 TGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCG 23741 |||||||| ||||| || ||||| ||||| || || ||||| || | || || | | Sbjct 1178 TGTGACCAGAAACGGTTAGCTGTTACCATTGAGTAAGTCTCTTCAGCTTGTGTTGGGTTA 1237 Query 23742 AACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACT 23801 ||||| || ||||||| || |||||||| | ||||| || || || || | Sbjct 1238 AACGCACGGAATGTGTTTGAACCATCACCATCTTCGAAAAGTGTGTTTTCTACTGTTGCA 1297 Query 23802 CCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAG 23861 || ||||| ||| | ||||||||| |||| |||| ||||| || |||||||| ||||| Sbjct 1298 CCGTGAATTGCACAAAGAAGTGCTGCTCCAAGTACTCCAGCTACACCCATCATGTGGAAT 1357 Query 23862 GGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCA 23921 |||| || |||||||| || || || |||| ||| || | || | |||||| | || Sbjct 1358 TGGTTAAGTGTCCAGTTGTGGAACCCTTGGAAGAAAAGGATAAAACGGAAAATTCCAGCT 1417 Query 23922 ACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACA 23981 |||||||| || ||||||||||| ||||||||| | || || || ||||||||| Sbjct 1418 ACACCGAATGAAGGTGCAAAGAACCATCCTGACTGTCCAAGTGGGTAAATAAGGAATACA 1477 Query 23982 GACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATT 24041 || |||||||||||||||||| | || || ||||| || ||||| ||||| ||| | | Sbjct 1478 GATACGAATACAGCAATAGGAGCTGAGAACGCAATTGCGTTGTACGGACGAATTTGTACT 1537 Query 24042 AGACGTGCCAGTTCAAACTGACGTAACATAAAACCTAT 24079 |||||| | |||||| ||||| | |||||| || || Sbjct 1538 GCACGTGCAATTTCAAATTGACGAAGCATAAATCCGAT 1575 >seq2286 Length=9169 Score = 239 bits (264), Expect = 6e-58 Identities = 510/754 (68%), Gaps = 47/754 (6%) Strand=Plus/Minus Query 47787 TCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTC 47846 ||| || ||| |||| | || | ||| |||||||||||||||||||||||| || | Sbjct 3750 TCCAGTTGCACAAACATAGTCTCCTGGTAATTCTTGTTGAAGCATTAACCACATGGCATA 3691 Query 47847 GACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACA 47906 ||||| ||| | |||||||||||||| || |||||| | |||||| || ||| Sbjct 3690 TACATATTCTTTTGCATGTCCCCAGTCCCGCTTTGCATCCAAATTTCCCAGTGTCAAAGT 3631 Query 47907 GTCTTGCTTACC---TTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAA 47963 | ||| || || || | | | || | ||||||||||| |||||||| || || Sbjct 3630 TTTTTGGTTGCCGCATTTAATGTTAGCC---ACAGCTCTTGTAATTTTACGAGTGACGAA 3574 Query 47964 AGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCC 48023 || ||||||| ||| ||| || ||||| || || ||| | | | |||||| Sbjct 3573 AGCCAGTCCACGTCGAGGACTTTCGTGGTTAAACAGTATGCCATTGCTTAAGTGCATTCC 3514 Query 48024 GTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGG 48083 || | || |||||||| |||||||| || |||| |||| |||||| | || || Sbjct 3513 ATAAGCCTCCCGATAGTTGACAACTATCCAATAAGCATATTGTTTAGCAACAGCGTACGG 3454 Query 48084 AGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAG 48143 || | ||| ||||| |||||||||||| | || || || |||||||| || || | || Sbjct 3453 TGATCTTGGGTAGAACGGTGTGGTCTCTTTTTGGGGCGTTTCTTGCACTTTTCCGAATAG 3394 Query 48144 TTCACTGGTGGATGCTTGAT-AGATACGAACCCTATCTTCCATCTCAAGCAA-ACGGACT 48201 ||||| ||||||||||||| | || | | ||||| | || | |||| ||| | | Sbjct 3393 CTCACTCGTGGATGCTTGATAAAATTTGCA-GCTATCGGCAATAT-TTGCAATACGTATT 3336 Query 48202 GCCTCAAGCACTCTCAGGGTGCCTATGGCATCT--GTCTGACCAGTATACTCGGGCATCT 48259 || | | | | || || || || || ||| || ||| ||||||||| |||| || Sbjct 3335 GCGTTTAATAACCGTAGTGTACCAATTGCGTCTACGTTTGA--AGTATACTCAGGCAACT 3278 Query 48260 CAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCT 48319 | ||||| || || || ||||| || || || | |||||||| ||| | ||| | || || Sbjct 3277 CGAACGAGACTTTAACGTGACTTTGCGCACCTAAATTATAAACCTCGTTTGGCTTAA-CT 3219 Query 48320 GCTGAATAAC--CCTCACT-AAATTTGTAGAGTCTGTTAAGTCTCCATAATGCA-----A 48371 || |||| ||| | ||||||| || ||||| || || |||||||| | | Sbjct 3218 TTTG--TAACTATATCAATCAAATTTGACGAATCTGTCAAATCCCCATAATGTAAATGCA 3161 Query 48372 TTTTA----------------------ATTGATCATAAATGTGATCAATTCTATGTGTAT 48409 | ||| | | || ||| | ||| || || ||| |||| Sbjct 3160 TATTATTGCTAGCATATGTATTCGAGGACTCATTATATAAGTGTTCTATCCTACCCGTAT 3101 Query 48410 TAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAAGAAGTT 48469 |||| ||| | ||||||| ||| ||||| || |||| | ||||| | ||| | | Sbjct 3100 TAATGCTAGACGAACGACGGATAATCCCATGCACAACATATCGTTTTTCTAAAAGTAACT 3041 Query 48470 CTGCTAAGTATGAACCATCTTGTCCTGTAATACC 48503 |||| | |||||| |||||||| ||||| || || Sbjct 3040 CTGCAAGGTATGACCCATCTTGACCTGTGATTCC 3007 >seq1642 Length=12514 Score = 165 bits (182), Expect = 1e-35 Identities = 268/382 (70%), Gaps = 8/382 (2%) Strand=Plus/Minus Query 47787 TCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTC 47846 ||| |||||| ||| ||||||| || ||||| || || |||| ||||||||| || Sbjct 2164 TCCAGTGGCACATACATAATCATCCGGGATATCTTGCTGTAGAATTAGCCACATAGCTTC 2105 Query 47847 GACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACA 47906 ||||||||| | ||||| ||||| || || | ||| | ||| |||||||| || Sbjct 2104 CACATAATCTTTAGCATGCCCCCAATCTCGCTTCGAATCTATATTACCTAGATACAATGT 2045 Query 47907 GTCTTGC---TTACCTTCAGAGATTGCTTTTAA-TGCTCTTGTAATCTTACGAGTTACAA 47962 |||||| |||| || |||| || || |||||| ||||| || || || || | Sbjct 2044 ATCTTGCAAATTACATTT---GATT-CTAGCAACTGCTCTAGTAATTTTTCGCGTGACGA 1989 Query 47963 AAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTC 48022 | || | || | || ||| |||||| ||||| | ||| ||| || | || ||| | Sbjct 1988 ACGTAGCCCCTCTTCGTGGGCTTTCATGGTTAAATAAAATCCCATTAGAAAGATGCATGC 1929 Query 48023 CGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAG 48082 |||| | ||| | |||||| | |||||| | || | |||||||||| |||| | Sbjct 1928 CGTACGCTTCTCTATAGTTTACAAGCATCCAGAATGCAAATTGTTTTGCAACTGCATATG 1869 Query 48083 GAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAA 48142 | || |||||||| ||||| || || || | |||||| || | || || ||| | | Sbjct 1868 GTGACCGTGGATAAAAAGGGGTTGTTTCCGACTGTGGCACTTCGCGAACTTTCCCAAACA 1809 Query 48143 GTTCACTGGTGGATGCTTGATA 48164 | |||||||| ||||||||||| Sbjct 1808 GCTCACTGGTAGATGCTTGATA 1787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665418317352720