Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq8698 87.8 2e-12 seq2286 82.4 9e-11 >seq8698 Length=1787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTG-GAGGGTATCTTCTTCTCCGGGTC 65126 || ||||| |||||| | |||| || || || ||| || |||||||||||| || || Sbjct 1367 TCGTTCGCAGAGCGCGTCGTTGCATTCGC-TGCGTGTGAAGGTATCTTCTTCAGTGGTTC 1309 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 ||||| || | | |||||| || || || ||| | |||||||| |||| || ||||| Sbjct 1308 CTTCTGTGCCGTGTTTTGGTTAAAAAAACGTGGTATGATGCCAGGTTTATGTTTTTCAAA 1249 Query 65187 TGAACTTATTTCCCGAGATGAGGGT 65211 ||| | ||||| || ||||| ||| Sbjct 1248 CGAATTGATTTCACGTGATGAAGGT 1224 >seq2286 Length=9169 Score = 82.4 bits (90), Expect = 9e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 177522 CCATGTGATCTCCTTTCCAACCTCTTTGAAGCACATTTCAACAAACTGCCTCACAGAGTG 177581 ||| | ||| || ||||||| || ||| ||||||| ||||| | ||||||| | Sbjct 3816 CCAAGCGATATCAATTCCAACGACTGCGAATGACATTTCGACAAAATATCTCACAGTATT 3757 Query 177582 TGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACAT 177641 || || || || || |||||| || | | ||||||||||||||| | |||||| Sbjct 3756 CGTTTCTCCAGTTGCACAAACATAGTCTCCTGGTAATTCTTGTTGAAGCATTAACCACAT 3697 Query 177642 GGCTTCAACATAGTCCTTGGCATGACCCCAGTC 177674 ||| | ||||| || || ||||| |||||||| Sbjct 3696 GGCATATACATATTCTTTTGCATGTCCCCAGTC 3664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596501397180480