Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq734 125 1e-23 seq4160 114 2e-20 seq6389 107 3e-18 seq810 107 3e-18 seq2305 105 1e-17 seq775 105 1e-17 >seq734 Length=33368 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193128 TATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAG 193187 || || || || | ||| || | ||| | ||||||| || || | |||||||| Sbjct 10547 TACATGCCTCCACGCAAACGTAATACTAAATGCAATACGGCTTCCTCTTGTATATTATAA 10488 Query 193188 TCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCA 193247 |||||||| || | | ||| |||| ||| || || ||||| || || | |||||||| Sbjct 10487 TCGGATAATGTACGACCATCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCT 10428 Query 193248 GGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 || || || |||||||||||||||||||| |||| ||||| ||| ||||| | || Sbjct 10427 GGTGGAATACCTTCTTTATCTTGTATTTTTAATTTTGTATTTTCAATTGTATCTGTTGAA 10368 Query 193308 TCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATAT 193354 ||| ||||| || |||||||| || | |||||||||||||| Sbjct 10367 GGAACAAAAAGAGTGATGGTTTTACCAGTCAAGGTTTTTACAAATAT 10321 >seq4160 Length=5066 Score = 114 bits (126), Expect = 2e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 193204 AATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTT 193263 |||| || |||||| ||| ||| | || || | |||||| | ||||| || ||||||| Sbjct 1023 AATCTTCCAATTGTAGTCCCGCATATATCAAACGTTGTTGACCTGGAGGGATACCTTCTT 964 Query 193264 TATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTA 193323 ||||||||||||| |||||||||| ||| ||||| || | || || || ||||| | Sbjct 963 TATCTTGTATTTTTTGTTTTATATTTGCAATTGTATCAGATGGTTCTACATCAAGAGTGA 904 Query 193324 TAGTTTTACCTGTTAGCGTTTTTACAAA 193351 | |||||||| |||| ||||| ||||| Sbjct 903 TGGTTTTACCAGTTAAAGTTTTAACAAA 876 >seq6389 Length=961 Score = 107 bits (118), Expect = 3e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | || || | || | |||||| |||| ||||| ||||||||| || | Sbjct 12 ACCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGC 71 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | ||| ||||||||||| || || || || |||| ||||| || || || Sbjct 72 TAATGTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGG 131 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||||||||| || || ||| | | |||| |||||| | ||| Sbjct 132 AATCCCTTCTTTATCTTGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGT 191 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACA 193349 |||||||| || ||||| || |||| ||||||||| Sbjct 192 ATCTAGAGTAATTGTTTTTCCAGTTAAAGTTTTTACA 228 >seq810 Length=26514 Score = 107 bits (118), Expect = 3e-18 Identities = 129/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||||| || ||||| || | | |||||||| || || ||||||||||| Sbjct 7671 ATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 7612 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || ||||| ||| ||||||||| || | || || || || || || Sbjct 7611 GTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTGAT 7552 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TTTATTAGTAAAATAA 193376 |||||||| || | |||||||| || |||||||| | |||| ||| |||| Sbjct 7551 GGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATGATGATTA-TAATATAA 7500 >seq2305 Length=8964 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | |||| | || | ||||||||| || ||||| |||||| Sbjct 1554 AATTTGCATGCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATT 1495 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| | || | ||| || |||||||| || ||||| || || | ||||| Sbjct 1494 GTAGTCACTAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTG 1435 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || |||||||||||||||||||| ||| | ||| ||||||||| || Sbjct 1434 ATCTGGTGGGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGA 1375 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGT 193336 | || || || || || || ||||| || || Sbjct 1374 CGGTTCTACATCAAGCGTGATGGTTTTCCCAGT 1342 >seq775 Length=28483 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || |||||||| || ||||| || | | |||||||| || || ||||||||||| Sbjct 10619 ATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 10560 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || ||| | ||| ||||||||| || | || || || ||||| || Sbjct 10559 GTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGAT 10500 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | |||||||| || |||||||| Sbjct 10499 GGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899551547010720