Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq8698 127 3e-24 seq2305 120 4e-22 seq6389 100 4e-16 seq734 98.7 1e-15 seq4160 96.9 5e-15 seq775 96.9 5e-15 seq4707 84.2 3e-11 >seq8698 Length=1787 Score = 127 bits (140), Expect = 3e-24 Identities = 386/589 (66%), Gaps = 10/589 (2%) Strand=Plus/Plus Query 18149 TATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTA 18208 |||||||| || || |||||| || ||||||||||| | || || |||||||| | Sbjct 1195 TATAATAAGCATGCGAAATCACAATGCAAACCTTCATCACGTGAAATCAATTCGTTTGAA 1254 Query 18209 AACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTA 18268 || ||| || ||||| ||||| | |||||||| |||||| | | ||| || | Sbjct 1255 AAACATAAACCTGGCATCATACCACGTTTTTTTAACCAAAACACGGCACAGAAGGAACCA 1314 Query 18269 GAAAAGAATATACCCTCA-ACGCACGCGAACGCTATTAATCTTTCAGCAAAAC-TGTATT 18326 ||||| ||||| ||| ||||| ||||| || | | | || || || || || Sbjct 1315 CTGAAGAAGATACCTTCACACGCA-GCGAATGCAACGACGCGCTCTGCGAACGATGCGTT 1373 Query 18327 TATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATA-CACGGTATACTC 18385 ||| | |||| ||||||| ||| | || | || | Sbjct 1374 GTCTGCGTTGG-TCCAACGCAAGCACCATTCTGCTTTTTCTTTGACGGCATCG-ATTGTA 1431 Query 18386 TCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTT--ATATAAGTGTCGATTA 18443 || |||||||| |||||| ||||||| ||| || || |||||||| |||| Sbjct 1432 TCAATAGCATTCAACAAACGCGTTTTTTCT--GGACCATTACGAATGTAAGTGTCTATTA 1489 Query 18444 ACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATC 18503 |||| ||||||| ||| | ||| || |||| ||||| || ||||| | ||| || | | Sbjct 1490 ACAAGGAATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAAC 1549 Query 18504 TAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATAC 18563 || || || ||| | ||| | |||| | | |||||| || || || |||| Sbjct 1550 GTGCTTCAGGCACTTGCACTTCGTTGGAAAAGTTCATCAACAAATTTTCGTTTACAATAC 1609 Query 18564 CGTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA 18623 |||| | | |||||||||||||| || | ||||||| | ||| ||||| | | Sbjct 1610 CGTCGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCA 1669 Query 18624 GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 || | ||| || | ||||| || | || | ||||||| ||||| ||||||| Sbjct 1670 TTTTATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATG 1729 Query 18684 ATTCGGCCTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 ||| || | ||| ||||||| ||||||| | |||||| || || || Sbjct 1730 CTTCAGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAA 1778 >seq2305 Length=8964 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155841 ACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTG 155900 ||||||||||| ||||| || || | || || ||| ||||||| |||| |||||| Sbjct 1336 ACATTGACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACTATTGAAAACGTT 1395 Query 155901 AAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCC 155960 ||| | |||||||||||||||||||| || || ||||| |||||| | ||||| | ||| Sbjct 1396 AAACAAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTTGCA 1455 Query 155961 GGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACG 156020 || || || | |||||| | || | || || ||||| ||||| || || Sbjct 1456 GGCAAACAATTGGAAGATGGGCGTACACTTAGTGACTACAATATTCAAAAAGAAGCAACA 1515 Query 156021 CTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 | |||||||| ||||||||| | || || Sbjct 1516 TTGCATTTAGTTTTAAGATTACGTGGTGG 1544 >seq6389 Length=961 Score = 100 bits (110), Expect = 4e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 ||||| || ||||||||||| ||||| |||| || | |||| |||| Sbjct 224 AAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCATTTCGCGT 165 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 |||||| | || || |||||||||||||| || || ||||| |||||| ||||||| | Sbjct 164 GTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGATATTC 105 Query 155958 GCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCG 156017 || ||||| || | |||||| | || ||| | ||||||||||| ||||| | Sbjct 104 GCAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAAGAATCT 45 Query 156018 ACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| | |||||||| || | ||| | || ||| Sbjct 44 ACGTTGCATTTAGTTTTGCGTTTACGTGGTGGT 12 >seq734 Length=33368 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/106 (81%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 155902 AAAAT--AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGC 155959 ||||| |||||||||||||||||||| || || ||||| |||||| | ||||| | ||| Sbjct 10392 AAAATTAAAAATACAAGATAAAGAAGGTATTCCACCAGATCAACAACGTTTGATATTTGC 10451 Query 155960 CGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATA 156005 |||||||| || |||||| | || ||||| |||||||||||| Sbjct 10452 AGGTAAGCAACTAGAAGATGGTCGTACATTATCCGATTATAATATA 10497 >seq4160 Length=5066 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| ||||||| || ||||| ||||| || || | || || ||| ||||||| ||| Sbjct 876 TTTGTTAAAACTTTAACTGGTAAAACCATCACTCTTGATGTAGAACCATCTGATACAATT 935 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 ||| | ||| | |||||||||||||||||||| || ||||||| |||||| | ||| Sbjct 936 GCAAATATAAAACAAAAAATACAAGATAAAGAAGGTATCCCTCCAGGTCAACAACGTTTG 995 Query 155952 ATTTATGCCGG 155962 || ||||| || Sbjct 996 ATATATGCGGG 1006 >seq775 Length=28483 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 155838 AAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAAC 155897 |||||||||||||| ||||| || || | || || ||| ||||||| |||| |||| Sbjct 10479 AAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCTGATACTATTGAAAAC 10538 Query 155898 GTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTAT 155957 || ||| | || || ||||| |||||||| || || ||||| |||||| | | || | | Sbjct 10539 GTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAACAACGTCTTATCTTT 10598 Query 155958 GCCGGTAAGCAGCTCGAAGAT 155978 || ||||| || | |||||| Sbjct 10599 GCAGGTAAACAATTGGAAGAT 10619 >seq4707 Length=625 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || ||||| |||||||| || |||||||| |||||| | | || | ||| ||||| Sbjct 260 AAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTTTGCTGGTAAA 319 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 || | |||||| | ||| | || ||||||||||| ||||| || || |||||| Sbjct 320 CAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGCAACCCTTCAT 379 Query 156027 TTAGTGTTAAGATTAAGAGGCGGT 156050 ||||| || | ||| | || ||| Sbjct 380 TTAGTATTGCGTTTACGTGGTGGT 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731788328733600