Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq810 179 7e-40 seq6389 145 2e-29 seq2305 145 2e-29 seq775 138 2e-27 seq734 132 9e-26 seq4707 129 1e-24 seq4160 122 2e-22 seq1282 118 2e-21 seq8698 114 3e-20 seq619 96.9 7e-15 seq3001 87.8 4e-12 >seq810 Length=26514 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || || | |||||||||||||||||||||||| || ||||| ||| || || ||| Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| ||| |||| |||||||||||||| |||||||| | | |||||||| ||||| Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| ||||| || || | |||||| || |||| ||| || | |||||| Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||||||||| || ||||| | || || ||||| Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq6389 Length=961 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | | ||| || |||||||| || |||| ||||| ||||||||||||| Sbjct 12 ACCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGC 71 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||| ||| |||| || ||||||||||| || || || |||| ||||| || ||||| Sbjct 72 TAATGTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGG 131 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| || || | ||| ||| | || | ||| | ||| Sbjct 132 AATCCCTTCTTTATCTTGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGT 191 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 ||||||||||| ||||| |||||||| ||||| Sbjct 192 ATCTAGAGTAATTGTTTTTCCAGTTAAAGTTTT 224 >seq2305 Length=8964 Score = 145 bits (160), Expect = 2e-29 Identities = 149/195 (76%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 ||| |||||||| || || || ||||| ||||| || ||| | ||| || |||| Sbjct 1530 TAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCATC 1471 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 ||||||||||| || ||||| || || | |||||||| ||||| || ||||||||||| Sbjct 1470 TTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATC 1411 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||||||||| | ||| || || |||| ||| |||| |||||| || || || ||||| Sbjct 1410 TTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGT 1351 Query 192504 TTTACCAGTTAATGT 192518 ||| ||||| ||||| Sbjct 1350 TTTCCCAGTCAATGT 1336 >seq775 Length=28483 Score = 138 bits (152), Expect = 2e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 192376 CGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCT 192435 ||| |||| |||||||||||||| |||||||| | | |||||||| ||||| |||||| Sbjct 10624 CGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCT 10565 Query 192436 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGA 192495 ||||| ||||| || || | ||| || || |||| ||| || | |||||| || ||| Sbjct 10564 TCTTTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGA 10505 Query 192496 GTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||||||| |||||||| | || || ||||| Sbjct 10504 GTGATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 Score = 105 bits (116), Expect = 1e-17 Identities = 96/120 (80%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 192321 ACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTC 192380 ||| | |||||||||||| || || ||||| ||||||||||||||| | || ||| | Sbjct 10814 ACGAAGTACTAAATGTAAGGTTGCTTCTTTTTGGATATTATAATCAGAAAGGGTACGTCC 10755 Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTAT-TCCTTCTT 192439 ||| |||||||||||||| |||||||| | | |||||||| ||||| || ||| |||| Sbjct 10754 ATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATGTCCATCTT 10695 >seq734 Length=33368 Score = 132 bits (146), Expect = 9e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 192321 ACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTC 192380 ||||||||||||||| || || || | ||||||||||| |||||||| || | Sbjct 10530 ACGTAATACTAAATGCAATACGGCTTCCTCTTGTATATTATAATCGGATAATGTACGACC 10471 Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440 ||| || | ||| ||||| ||||| || || | |||||||| ||||| || |||||||| Sbjct 10470 ATCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTGGAATACCTTCTTT 10411 Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500 |||||||||||| |||| ||| || | ||||| || || ||||| || Sbjct 10410 ATCTTGTATTTTTAATTTTGTATTTTCAATTGTATCTGTTGAAGGAACAAAAAGAGTGAT 10351 Query 192501 GGTTTTACCAGTTAATGTTTTAATAAATATC 192531 |||||||||||| || ||||| | ||||||| Sbjct 10350 GGTTTTACCAGTCAAGGTTTTTACAAATATC 10320 >seq4707 Length=625 Score = 129 bits (142), Expect = 1e-24 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | ||| ||||||||||| | || || ||||| ||||||||||||| Sbjct 405 ATACCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCA 346 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||||||||||||||||||||| | | |||||||| || Sbjct 345 GAAAGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGA 286 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452 || ||||||||||| ||||| || || Sbjct 285 GGAATTCCTTCTTTGTCTTGGATCTT 260 >seq4160 Length=5066 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440 ||| ||||||||| || ||| | || || | |||||| | || || || |||||||| Sbjct 1022 ATCTTCCAATTGTAGTCCCGCATATATCAAACGTTGTTGACCTGGAGGGATACCTTCTTT 963 Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500 |||||||||||| | ||||| ||| | || | ||| || | |||||| || ||||| || Sbjct 962 ATCTTGTATTTTTTGTTTTATATTTGCAATTGTATCAGATGGTTCTACATCAAGAGTGAT 903 Query 192501 GGTTTTACCAGTTAATGTTTTAATAAA 192527 ||||||||||||||| ||||||| ||| Sbjct 902 GGTTTTACCAGTTAAAGTTTTAACAAA 876 >seq1282 Length=23488 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | ||| |||||||||||||| | ||||| ||||| || || ||||| Sbjct 1302 ATTCCTCCACGAAGTCGTAATACTAAATGGACGGTAGCTTCTTTTTGAATGTTGTAATCG 1243 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || ||| |||||||| | ||| ||||| || | || |||||||| ||| Sbjct 1242 GATAATGTACGCGTATCTTCCAATTGATAACCTGCAAAAATAATTCGTTGTTGATCTGGT 1183 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||| | ||| || || |||||||| | || | || | | Sbjct 1182 GGACATCCTTCTTTCTTTTGAATCTTTAATTTTACATCTGCAATCAATTCATTTTGTAAT 1123 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| || ||||||||||| || ||||||| ||| | ||||| Sbjct 1122 ACGTCCAAAGTGATTGTTTTACCAGTCAACGTTTTAACAAAGAATTGCAT 1073 >seq8698 Length=1787 Score = 114 bits (126), Expect = 3e-20 Identities = 207/297 (70%), Gaps = 7/297 (2%) Strand=Plus/Plus Query 50106 ATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAAT 50165 ||||| || ||||||| ||| | ||| | | ||| ||||| |||||||| ||| || Sbjct 1486 ATTAACAAGGAATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAA 1545 Query 50166 TGTCTTGCTTCTGAATACTGAACTTCG---GAAAAGAATCGTTCAACTAAATTCTCAGAT 50222 | |||||| | || |||||| |||||| || | |||| ||||| || | Sbjct 1546 CAACGTGCTTCAGGCACTTGCACTTCGTTGGAAAAGT-TCAT-CAAC-AAATTTTCGTTT 1602 Query 50223 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTA 50282 |||||||| || ||||| ||||| ||||| || |||| |||| || | ||| ||| Sbjct 1603 ACAATACCGTCGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTA 1662 Query 50283 TCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAA 50342 || | | || |||||| || ||| | || || |||| ||||| ||||| Sbjct 1663 TCGCTCATTTTATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAG 1722 Query 50343 AATGATGCTACGGATTTTTTATACATTTGATATATATCAAAATGTTCAA-TGGGAAA 50398 || |||||| | | ||||||||||||||| | |||||| ||||| || ||||||| Sbjct 1723 AAAGATGCTTCAGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAA 1779 >seq619 Length=74796 Score = 96.9 bits (106), Expect = 7e-15 Identities = 162/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| |||||||||||||||||| || || | ||||| || || |||| ||| Sbjct 48578 ACCACCTCGAAGACGTAATACTAAATGCAACGTCGATTCTTTCTGGACGTTGTAATAAGA 48519 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||| || |||| || ||||||||||| |||| || || | |||| || || || Sbjct 48518 CAATGGGCGATCATTGTCTAATTGTTTACCTCCAAAAATCAAACGTTGTTTATTTGGCGG 48459 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG--TT--ATAGAATCTGACGATT 192484 || |||| ||||||| || | ||||| || || | | ||| || | | Sbjct 48458 TACACCTTGCCTATCTTGGATGGCAGCTTTTA----AGGCTTCCACCGTATCAGATGGGT 48403 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||| || | ||||||||| | ||| |||| ||||| | || || ||||| Sbjct 48402 CTACATCAACCGTAATGGTTGTCCCATTTAACGTTTTGACGAAGATTTGCAT 48351 >seq3001 Length=6688 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| |||||||| || || | ||| ||||||||||| ||||||| |||||| | Sbjct 4423 ATATTGTAATCAGACAAAGTGCAAGTATCTTCCAATTGTTTCCCAGCAAGGATTAAAATT 4364 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||| || | || |||||||| ||||| ||| | | || ||||| | || Sbjct 4363 TGTTGACTTGGAGCGATACCTTCTTTTTCTTGAATTCTCTGCTTAACATTTTCAACAGTG 4304 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || |||| | | || || | || | || || || |||| |||||| ||| |||||| Sbjct 4303 TCAGACGCTACCACATCCAAGGTGGTCGTCTTGCCTCTTAAATTTTTAACAAAAATCTGC 4244 Query 192535 AT-TTTAT 192541 || ||||| Sbjct 4243 ATCTTTAT 4236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984364635557100