Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq810 156 8e-33 seq6389 136 7e-27 seq2305 134 2e-26 seq775 132 9e-26 seq4160 116 7e-21 seq734 113 8e-20 seq8698 107 3e-18 seq1282 104 4e-17 seq4707 102 1e-16 seq619 84.2 4e-11 >seq810 Length=26514 Score = 156 bits (172), Expect = 8e-33 Identities = 178/238 (75%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| |||||||||||||||||||| || ||||| || || || || Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| | || |||||||||||||| ||||| || | | ||||| || ||||| Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||| ||||| || || | |||||| || |||||||| || | |||||| Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT-TTTATTATAA 172079 || || || |||||||||||||| || ||||| | ||| || ||||| | ||||||| Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATGATGATTATAA 7505 >seq6389 Length=961 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | | || || |||||||| || |||| ||||| |||||||||||| | Sbjct 12 ACCACCACGTAAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGC 71 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | ||| | || || ||||||||||| || || || |||| |||||||| ||||| Sbjct 72 TAATGTACGTCCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGG 131 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| || || | ||| ||| | || ||||| | ||| Sbjct 132 AATCCCTTCTTTATCTTGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGT 191 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 ||||||||||| ||||| |||||||| ||||| Sbjct 192 ATCTAGAGTAATTGTTTTTCCAGTTAAAGTTTT 224 >seq2305 Length=8964 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | | || ||| |||||||| || || || ||||| |||||| || || Sbjct 1547 ATGCCACCACGTAATCTTAAAACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCA 1488 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | || ||||||||||| || ||||| || || | ||||| || ||| Sbjct 1487 CTAAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGT 1428 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||||||||| | ||| || || |||||||| |||| |||| Sbjct 1427 GGGATACCTTCTTTATCTTGTATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCT 1368 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 || || || || |||||||| ||||| ||||| Sbjct 1367 ACATCAAGCGTGATGGTTTTCCCAGTCAATGT 1336 >seq775 Length=28483 Score = 132 bits (146), Expect = 9e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| | || |||||||||||||| ||||| || | | ||||| || ||||| |||||| Sbjct 10624 CGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCT 10565 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 ||||| ||||| || || | ||| || || |||||||| || | |||||| || ||| Sbjct 10564 TCTTTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGA 10505 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||||||||| |||||||| | ||| || ||||| Sbjct 10504 GTGATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq4160 Length=5066 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||| || ||| | || || | ||||| | || || || ||||||||| Sbjct 1021 TCTTCCAATTGTAGTCCCGCATATATCAAACGTTGTTGACCTGGAGGGATACCTTCTTTA 962 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||||||||| | ||||| ||| | || ||||| || | |||||| || ||||| ||| Sbjct 961 TCTTGTATTTTTTGTTTTATATTTGCAATTGTATCAGATGGTTCTACATCAAGAGTGATG 902 Query 172035 GTTTTACCAGTTAATGTTTTAA 172056 |||||||||||||| ||||||| Sbjct 901 GTTTTACCAGTTAAAGTTTTAA 880 >seq734 Length=33368 Score = 113 bits (124), Expect = 8e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 |||||||||||||| || || || | ||||||||||| ||||| | || | Sbjct 10529 CGTAATACTAAATGCAATACGGCTTCCTCTTGTATATTATAATCGGATAATGTACGACCA 10470 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| ||||| ||||| || || | ||||| || ||||| || ||||||||| Sbjct 10469 TCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTGGAATACCTTCTTTA 10410 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||||||||| |||| ||| || ||||||| || || ||||| ||| Sbjct 10409 TCTTGTATTTTTAATTTTGTATTTTCAATTGTATCTGTTGAAGGAACAAAAAGAGTGATG 10350 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATC 172064 ||||||||||| || ||||| | |||||| Sbjct 10349 GTTTTACCAGTCAAGGTTTTTACAAATATC 10320 >seq8698 Length=1787 Score = 107 bits (118), Expect = 3e-18 Identities = 200/288 (69%), Gaps = 7/288 (2%) Strand=Plus/Plus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 ||||||| ||| | ||| | | ||| ||||| |||||||| ||| || | |||| Sbjct 1495 GAATACACTTCTGCATGAATATTTTCGATAGCGATTTGAAAGCCATAGAAACAACGTGCT 1554 Query 39477 TCTGAATACTGAACTTCG---GAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCA 39533 || | || |||||| |||||| || | |||| ||||| || ||||||||| Sbjct 1555 TCAGGCACTTGCACTTCGTTGGAAAAGT-TCAT-CAAC-AAATTTTCGTTTACAATACCG 1611 Query 39534 TCAGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAA 39593 || ||||| ||||| ||||| || || | |||| || | ||| ||||| | | Sbjct 1612 TCGGATGCAGCGAAAAATGCCAATACGTTGCTAATGAAGTAACGTTCGTTATCGCTCATT 1671 Query 39594 TTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 || |||||| || ||| | || || |||| ||||| ||||| ||||||||| Sbjct 1672 TTATCCCAATCTTTCGCATCTTGTGCCAAGTCTAACTCTTCCGCAGTCCAGAAAGATGCT 1731 Query 39654 ACGGATTTTTTATACATTTGATATATATCAAAATGTTCAA-TGGGAAA 39700 | | ||||||||||||||| | |||||| ||||| || ||||||| Sbjct 1732 TCAGCTTTTTTATACATTTGCCAAATATCATTATGTTGAATTGGGAAA 1779 >seq1282 Length=23488 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | |||||||||||||||||| | ||||| ||||| ||| || ||||| Sbjct 1302 ATTCCTCCACGAAGTCGTAATACTAAATGGACGGTAGCTTCTTTTTGAATGTTGTAATCG 1243 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || || |||||||| | ||| |||||||| | || ||||| || ||| Sbjct 1242 GATAATGTACGCGTATCTTCCAATTGATAACCTGCAAAAATAATTCGTTGTTGATCTGGT 1183 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||| | ||| || || |||||||| | || || | | Sbjct 1182 GGACATCCTTCTTTCTTTTGAATCTTTAATTTTACATCTGCAATCAATTCATTTTGTAAT 1123 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| || ||||||||||| || ||||||| || | ||||| Sbjct 1122 ACGTCCAAAGTGATTGTTTTACCAGTCAACGTTTTAACAAAGAATTGCAT 1073 >seq4707 Length=625 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | | || ||||||||||| | || || ||||| ||||||||||| Sbjct 405 ATACCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCA 346 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || ||| | || |||||||||||||||||||| || | | ||||| || || Sbjct 345 GAAAGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGA 286 Query 171960 GGTATTCCTTCTTTATCTTGTATTTT 171985 || ||||||||||| ||||| || || Sbjct 285 GGAATTCCTTCTTTGTCTTGGATCTT 260 >seq619 Length=74796 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||| ||| |||||||||||||| || || | ||||| | || |||| || Sbjct 48578 ACCACCTCGAAGACGTAATACTAAATGCAACGTCGATTCTTTCTGGACGTTGTAATAAGA 48519 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || || | || ||||||||||| ||||||| || | |||| | || || Sbjct 48518 CAATGGGCGATCATTGTCTAATTGTTTACCTCCAAAAATCAAACGTTGTTTATTTGGCGG 48459 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG--TT--ATAGTATCTGACGATT 172017 || |||| ||||||| || | ||||| || || | ||||| || | | Sbjct 48458 TACACCTTGCCTATCTTGGATGGCAGCTTTTA----AGGCTTCCACCGTATCAGATGGGT 48403 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| || | ||||||||| | ||| |||| ||||| | ||| || ||||| Sbjct 48402 CTACATCAACCGTAATGGTTGTCCCATTTAACGTTTTGACGAAGATTTGCAT 48351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905032520326800