Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq769 165 2e-35 seq2289 111 5e-19 seq714 84.2 6e-11 >seq769 Length=28997 Score = 165 bits (182), Expect = 2e-35 Identities = 404/612 (66%), Gaps = 3/612 (0%) Strand=Plus/Minus Query 155909 TACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA 155968 |||||| | ||| |||| ||| ||| || |||||||| | || | ||| || Sbjct 12691 TACACGTTTCATGAATAAATCTGGAATCCACATTGCATAGAACAAATCGCGTGCACGTGC 12632 Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 | ||||| || ||||| || || ||||| || || | ||||| ||| ||| Sbjct 12631 ATTTTCATCACCATGATTTTTTTTAAGATCTAAAAACTCGAAGACATCAGCATGCCATGG 12572 Query 156029 CTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTGATCTACATACCGAGC 156085 |||| || ||||||||| ||| || || || |||||| || ||||| || || || Sbjct 12571 TTCCAAGTAAATAGCAAAAGAACCTTTTCTTTTACCGCCACCTTGGTCTACGTAACGTGC 12512 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCG 156145 || | |||||| || | ||||| || | ||| ||||| | |||||| || ||||| Sbjct 12511 GGTATCATTGAATACTCTCAGCATTGGGACAATTCCATTACTTGAGCCATTTGTACCGCG 12452 Query 156146 AATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTT 156205 || | |||| || | || |||| | | |||||||||||| | |||| Sbjct 12451 GATGTAACTTCCAGTACTACGGATGTTGTGAACACTCAATCCAATACCACCAGCATATTT 12392 Query 156206 AGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| || || |||| |||| |||||||| |||| |||||||||| ||| Sbjct 12391 ACTGATTTGCGCACAAGATTTTAACGTATCATAAATACCTCCAATGGAATCATCTTTCAT 12332 Query 156266 TGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGG 156325 || | | | |||| || ||||| || ||||| || ||||| ||||| | ||| || Sbjct 12331 TGCAACCAAAAAGCATGATGCCAATTGTGGGCGTGGGGTACCAGCATTGAACAATGTCGG 12272 Query 156326 TGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAG 156385 |||||||| |||| | | ||| ||| |||||||||| || | || | Sbjct 12271 CGTTGCATGGGTAAACATCATTTTACTCATCAAATCGTATGTGATAATAGCACTGTCGAT 12212 Query 156386 ATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAAT 156445 || | |||||||| | | || | ||| |||||| || || | || ||||| Sbjct 12211 ATCTTCCTTGTGAATACCAACTGCAACACGCATAATCATATGTTGTGGTCTTTCAACAAT 12152 Query 156446 CACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAA 156505 | |||| ||| || | ||||| ||||| || ||||| || || || |||||||| Sbjct 12151 TTCACCATTTATTTTCAACAAATATGCACGTTCTAGCGTTTTGAAACCAAAGTAATCAAA 12092 Query 156506 CAGAAAATCACG 156517 | || ||||| Sbjct 12091 CGAGAAGTCACG 12080 >seq2289 Length=9137 Score = 111 bits (122), Expect = 5e-19 Identities = 188/268 (70%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || |||| || ||| || |||| ||||||| ||||||| ||||||||| | | Sbjct 1705 AAACAAATCTCGTATACGACGGGCACCAACACCAACAAACATTTCATCAAATTCAGCACC 1646 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 ||| | | || |||| || || ||||| || || || | || | | ||| || Sbjct 1645 GGAGGCATAAAAAAATGGCACGCCAGCCTCGCCAGCAACAGCACGTGCTAATAATGTTTT 1586 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC-AGACT 289267 ||||||||||| ||||| |||||| || || ||||||| ||| |||| | | || Sbjct 1585 CCCTGTTCCAGGCGGTCCAGCTAATAATACACCTTTTGGTAATTT---CCCACCTAAACG 1529 Query 289268 TAT-ATTTCTCAGGGCTC-TTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | | | || | || || ||||| |||||||||||||| | | || || ||| || || Sbjct 1528 TGTAAATTTACTTGGATCTTTTAAGTATTCTACAATTTCCACTAATTGATCTTTCGCTTC 1469 Query 289326 ATCACATCCTGCTACATCAGCAAAAGTA 289353 || || ||| ||||||| |||| ||| Sbjct 1468 CTCGCAACCTTGTACATCATCAAAGGTA 1441 >seq714 Length=36308 Score = 84.2 bits (92), Expect = 6e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||||| |||| | |||||||||||||| ||||| | ||| | ||||||||| Sbjct 2903 TAGCACCGTATCCAATTAGGCAATCACGTTCCATCTCACCTAAACGTAAACCACCATCTC 2962 Query 233331 TTGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAAT 233390 ||| | ||| | || ||| || ||||| || | |||||| || | | | | || Sbjct 2963 TTGCTCGACCTTCCGTTGGTTGTCGTGTTAATACTGCTCTTGGTCCTCGGGACCTAGCAT 3022 Query 233391 TAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA-ACACGGACCAATAAATA 233447 ||||||||| |||||||||||| | | | ||| || ||| || || ||||||| Sbjct 3023 GCATTTTATCTAAAACCATATGCTTTAATTTTTGATAGTAGACA-GGGCCCATAAATA 3079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471645127814202