Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq888 390 1e-103 >seq888 Length=1579 Score = 390 bits (432), Expect = 1e-103 Identities = 501/691 (73%), Gaps = 0/691 (0%) Strand=Plus/Minus Query 152681 TAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGTATCCGTCCCTACA 152740 ||||||| || |||||||| || |||||| | |||||| | || ||||| |||| Sbjct 1577 TAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACA 1518 Query 152741 ATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTC 152800 | || ||||||||||| | |||||| ||||| || || || || || || ||||| | Sbjct 1517 ACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCAC 1458 Query 152801 TGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCC 152860 | || || || | ||||| || || || || ||||| || || | ||| ||||| || Sbjct 1457 TTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTA 1398 Query 152861 TTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTG 152920 | || ||| | ||||| ||||||||||||||| | || | || || ||||||||||| | Sbjct 1397 TCCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAG 1338 Query 152921 CAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTT 152980 | || | | |||| || | |||| ||| ||||| |||| |||||||| || || Sbjct 1337 CTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACAC 1278 Query 152981 TGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAG 153040 | | |||||||||| ||||||| ||| || || || || |||| |||| Sbjct 1277 TTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAG 1218 Query 153041 AGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTA 153100 |||| || || ||||| || ||||||||||||||||| ||||| || || | || || Sbjct 1217 AGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCT 1158 Query 153101 GCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCT 153160 || || || |||||||| ||||| ||||| || |||||||| | || | |||| | Sbjct 1157 CAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGT 1098 Query 153161 CTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAG 153220 | | |||| | |||| | || || || ||||| |||||||| ||||| |||| Sbjct 1097 CAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAG 1038 Query 153221 AAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGA 153280 | ||| | || | ||||||||||| ||||| || ||||| || |||||||| ||| | | Sbjct 1037 AGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTA 978 Query 153281 ACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCC 153340 |||||||| ||||||| ||| ||||| || || || || ||||| ||| | || |||| Sbjct 977 ACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCC 918 Query 153341 CTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||| |||||| | ||||| || |||||||| Sbjct 917 CTGAGGAGGTACTTCCACGTGGAAACGCTCT 887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549559564419120