Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq810 134 1e-26 seq775 123 2e-23 seq4707 118 1e-21 seq2305 114 1e-20 seq769 107 2e-18 seq4160 105 6e-18 seq6389 102 7e-17 seq734 95.1 1e-14 >seq810 Length=26514 Score = 134 bits (148), Expect = 1e-26 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || |||||||| || || || || |||||| | | Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| |||||||||||||| ||||||||||||||||| || || |||||| Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||| | |||||||| || ||||| |||| || | || ||| | || || || Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGA-TGGACGTACACTTAGTGACTACAA 7694 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 ||| ||||| ||| | || |||| || || || || | || ||||| | | ||| || Sbjct 7695 CATCCAAAAAGAAGCAACTTTACATTTAGTATTACGTCTTCGTGGAGGGGCACTTGACCC 7754 Query 24943 AAC 24945 ||| Sbjct 7755 AAC 7757 >seq775 Length=28483 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| | || |||||||| || || || || |||||| | | Sbjct 10464 ATGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCT 10523 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||||||||||||||||||||||||||||| || || |||||| Sbjct 10524 GATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAA 10583 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 |||||| | |||||||| || ||||| |||| ||| Sbjct 10584 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGAT 10619 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 24786 AAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGA 24845 ||||||||||||||||||||||||| || || |||||||||||| | |||||||| || | Sbjct 10626 AAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAACAACGTCTTATCTTTGCAGGTA 10685 Query 24846 AACAGCTGGAGGAT 24859 |||| |||| ||| Sbjct 10686 AACAATTGGAAGAT 10699 >seq4707 Length=625 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 ||| || |||||||||||||||||||||||||| ||||| |||||||||||| | ||||| Sbjct 250 GGTCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTT 309 Query 24838 TGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATC 24897 ||| || ||||| |||| ||| | | | || |||||||| || ||||| ||| | Sbjct 310 TGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGC 369 Query 24898 GACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || ||||| || || || || Sbjct 370 AACCCTTCATTTAGTATTGCGTTTACGTGGTGG 402 Score = 86.0 bits (94), Expect = 6e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 24778 GGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTT 24837 ||| || |||||||||||||||||||||||||| ||||| |||||||||||| | ||||| Sbjct 564 GGTCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTT 623 Query 24838 TG 24839 || Sbjct 624 TG 625 >seq2305 Length=8964 Score = 114 bits (126), Expect = 1e-20 Identities = 151/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || ||||| || ||||| || |||||| | | || || | |||| || |||||| Sbjct 1342 ACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACTATTGAAAACGTTAAACAA 1401 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || || ||||| |||||||| || || || ||||||||||||||||| ||||| || ||| Sbjct 1402 AAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTTGCAGGCAAA 1461 Query 24848 CAGCTGGAGGATTCGAG-AAACAT-GTCAGATTATAACATTCAAAAGGAATCGACACTAC 24905 || |||| ||| | | | || | || || || || |||||||| ||| | ||| | | Sbjct 1462 CAATTGGAAGATGGGCGTACACTTAGT--GACTACAATATTCAAAAAGAAGCAACATTGC 1519 Query 24906 ACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || || || |||| || || ||| Sbjct 1520 ATTTAGTTTTAAGATTACGTGGTGGC 1545 >seq769 Length=28997 Score = 107 bits (118), Expect = 2e-18 Identities = 552/869 (64%), Gaps = 45/869 (5%) Strand=Plus/Minus Query 139078 CAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCG 139137 || || || |||| ||| || || || | ||| || || | | ||||||| || || Sbjct 13014 CAGATAGATGCTAAGTTACAAACAGCAATTTCATCAGGTGCAGTATATTCGATGATCTCA 12955 Query 139138 GCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAA 139197 | || |||||||||| || ||||| || || |||||||||||| ||| || ||||| Sbjct 12954 GTGCATAAATTACTACTTTTAATCGTTCCCAAGTTTTGTTGATTGGATTTACGATTACAT 12895 Query 139198 GCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTG 139257 ||||||||||| | ||| || || || || ||||| ||||| | || ||||| ||| Sbjct 12894 GCATCTTTGTACAACATGTATGGCGTACCTGTTTCAACTTGACTTTC---AATGATTTTA 12838 Query 139258 AACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTC-GTCGCGCT--CGTACTTT--- 139311 ||| | | | ||||| ||||||| |||| || | || | | |||| Sbjct 12837 AACCA-TAATT--CTTGT-------GCACGTACGGTTCTGTAACCCTTGCCTTCTTTTTC 12788 Query 139312 -------TCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATC----GCGAC 139360 | ||| | | | |||||| ||||| | | ||| | ||| || || Sbjct 12787 ATATTGATGGTACAATGCTTCGAATTTCTCACCCCACGTCTCATGCAAATCACGTGCAAC 12728 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 | || || || | | | |||| || | || | || || ||||||| | || Sbjct 12727 ATTT----GGGCAAAACAATGTCCATTGTCCATCTGCTTGTACACGTTTCATGAATAAAT 12672 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATG-TTA 139479 | |||||||||| || | | ||||||||| || || ||| | ||||| || Sbjct 12671 CTGGAATCCACATTGCATAGAACAAATCGCGTGCACGTGCATTTTCATCA-CCATGATTT 12613 Query 139480 CGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATT 139539 ||| | | | || || || || ||||| ||||||||||||| || || || | Sbjct 12612 TTTTTAAGATCTAAAAACTCGAAGACATCAGCATGCCATGGTTCCAAGTAAATAGCAAAA 12553 Query 139540 GCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGC 139596 | ||||| | ||| ||||||||| || |||| ||| | | || ||||||||| | | Sbjct 12552 GAACCTTTTCTTTTACCGCCACCTTGGTCTACGTAACGTGCGGTATCATTGAATACTCTC 12493 Query 139597 AACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCT 139656 | ||| || | | || | || || || || | |||||| ||| | | || Sbjct 12492 AGCATTGGGACAATTCCATTACTTGAGCCATTTGTACCGCGGATGTAACT-TCCAGTACT 12434 Query 139657 -CGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATC 139715 |||| || || ||| | | || || || || || |||| ||| | ||| Sbjct 12433 ACGGATGTTGTGAACACTCAATCCAATACCACCAGCATATTTACTGATTTGCGCACAAGA 12374 Query 139716 GCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 ||| || || || ||||||| ||| || || | ||| | |||| ||||||||| Sbjct 12373 TTTTAACGTATCATAAATACCTCCAATGGAATCATCTTTCATTGCAACCAAAAAGCATGA 12314 Query 139776 CGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACAT 139835 | | ||| || || || || || |||| || || | || || || ||||| Sbjct 12313 TGCCAATTGTGGGCGTGGGGTACCAGCATTGAACAATGTCGGCGTTGCATGGGTAAACAT 12254 Query 139836 TTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGATA 139893 ||| |||||| ||||| || || || || | ||||| |||| ||| ||| Sbjct 12253 CATTTTACTCATCAAATCGTATGTGATAATAGCACTGTCGATATCTTCCTT--GTGAATA 12196 Query 139894 CCGACAGAGACTCGCATCAGCATATGTTG 139922 || || | || ||||| | ||||||||| Sbjct 12195 CCAACTGCAACACGCATAATCATATGTTG 12167 >seq4160 Length=5066 Score = 105 bits (116), Expect = 6e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 24713 TTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTA 24772 ||| ||||||| |||| |||||||| || || || || |||||| | | || ||| | Sbjct 876 TTTGTTAAAACTTTAACTGGTAAAACCATCACTCTTGATGTAGAACCATCTGATACAATT 935 Query 24773 GAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTG 24832 | || |||||||||| || ||||| |||||||| || ||||| | ||||||||||||| Sbjct 936 GCAAATATAAAACAAAAAATACAAGATAAAGAAGGTATCCCTCCAGGTCAACAACGTTTG 995 Query 24833 ATCTTTGCCGGGAAACAGCTGGAGGATTCGA 24863 || | ||| || ||| |||| |||| || Sbjct 996 ATATATGCGGGACTACAATTGGAAGATTGGA 1026 >seq6389 Length=961 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 ||||| |||| || ||||| ||||| || || ||| || | ||| || | Sbjct 224 AAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCATTTCGCGT 165 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || ||||||||||||||||| |||||||| || || || || |||||||| ||||| || Sbjct 164 GTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGATATTC 105 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAACATTCAAAAGGAATC 24897 || || ||||| | || || | || ||| | | |||||||| |||||||| ||||| Sbjct 104 GCAGGTAAACAATTAGAAGA-TGGACGTACATTAGCTGATTATAATATTCAAAAAGAATC 46 Query 24898 GACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || | || || || ||||| || || || || Sbjct 45 TACGTTGCATTTAGTTTTGCGTTTACGTGGTGG 13 >seq734 Length=33368 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||| ||| ||| | ||||| | || |||||||| || || || || | || Sbjct 10314 GATGACGATATTTGTAAAAACCTTGACTGGTAAAACCATCACTCTTTTTGTTCCTTCAAC 10373 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | |||| |||| ||| || ||||| |||||||| || || || ||||| Sbjct 10374 AGATACAATTGAAAATACAAAATTAAAAATACAAGATAAAGAAGGTATTCCACCAGATCA 10433 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTA 24879 |||||||||||| ||||| || || || || || ||| ||| ||| | || ||||| Sbjct 10434 ACAACGTTTGATATTTGCAGGTAAGCAACTAGAAGATGGTCG---TACATTATCCGATTA 10490 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||| ||||| | | | || || || || || ||||| |||||| Sbjct 10491 TAATATACAAGAGGAAGCCGTATTGCATTTAGTATTACGTTTGCGTGGAGGC 10542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449846165456880