Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6389 86.0 5e-12 seq810 84.2 2e-11 >seq6389 Length=961 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 107567 TGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGCGATAC--TGTC 107624 ||| ||||||||||| || ||||| ||||| | || || ||||| ||||||| | || Sbjct 228 TGTAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCATTTC 169 Query 107625 GGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTT 107684 | | || ||||||||||| ||||||||||| | || || || || || | Sbjct 168 G--CGTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTG 111 Query 107685 ATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAG 107744 || | || |||||||| | || || | ||| | || || || || |||||||| Sbjct 110 ATATTCGCAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAA 51 Query 107745 GAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||||||||||| | || ||| | || || || || Sbjct 50 GAATCTACGTTGCATTTAGTTTTGCGTTTACGTGGTGG 13 >seq810 Length=26514 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || |||||||| || || |||||||| ||| | || || | Sbjct 7516 ATGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCT 7575 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | ||||||||||||||| || |||||||| | || ||||| Sbjct 7576 GATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAA 7635 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | ||||| | ||| |||||||| |||| || | ||| | ||||||||| Sbjct 7636 CAACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGTGACTACAAC 7695 Query 107736 ATTCAAAAGGA 107746 || ||||| || Sbjct 7696 ATCCAAAAAGA 7706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398832338449594