Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq810 161 2e-34 seq6389 154 2e-32 seq775 140 5e-28 seq2305 138 2e-27 seq734 136 6e-27 seq1282 132 8e-26 seq4707 100 4e-16 seq4160 98.7 2e-15 seq619 86.0 1e-11 >seq810 Length=26514 Score = 161 bits (178), Expect = 2e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||| || || || ||||| || || |||||||||||| | Sbjct 7517 TGCAAATTTTCGTAAAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCTG 7576 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| |||||| | || || ||| |||||||| |||||||| ||||||| Sbjct 7577 ATACTATTGAAAACGTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAAC 7636 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||||||||||||||| || ||| | || | | || || || | Sbjct 7637 AACGTCTTATCTTTGCAGGTAAACAATTGGAAGATGGACGTACACTTAGTGACTACAACA 7696 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||| | ||| | |||||||||||||| Sbjct 7697 TCCAAAAAGAAGCAACTTTACATTTAGTATTACG 7730 >seq6389 Length=961 Score = 154 bits (170), Expect = 2e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 146044 TAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAA 146103 ||||||| ||||| ||||||||||||||| | ||| ||| | |||||| ||| Sbjct 226 TAAAAACTTTAACTGGAAAAACAATTACTCTAGATACAGAGGCAAGCGATACCATTTCGC 167 Query 146104 ATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTT 146163 ||| ||| | || || ||| ||||||||| |||||||| || |||||| || | || | Sbjct 166 GTGTGAAACAAAAGATCCAAGATAAAGAAGGGATTCCACCAGACCAACAACGATTGATAT 107 Query 146164 TTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAAT 146223 | ||||||||||||||||| ||| | || ||| | ||||||||||| |||||||||| Sbjct 106 TCGCAGGTAAACAATTAGAAGATGGACGTACATTAGCTGATTATAATATTCAAAAAGAAT 47 Query 146224 CGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || | |||||||| || || ||| | || ||| Sbjct 46 CTACGTTGCATTTAGTTTTGCGTTTACGTGGTGGT 12 >seq775 Length=28483 Score = 140 bits (154), Expect = 5e-28 Identities = 124/155 (80%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||||||||| || || ||||| || ||| |||||||||||| | Sbjct 10465 TGCAAATTTTCGTAAAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCTG 10524 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| || ||| | || || ||| |||||||| |||||||| ||||||| Sbjct 10525 ATACTATTGAAAACGTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAAC 10584 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || | || || ||||||||||||||||| || ||| Sbjct 10585 AACGTCTTATCTTTGCAGGTAAACAATTGGAAGAT 10619 Score = 100 bits (110), Expect = 4e-16 Identities = 111/146 (76%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 146120 ACAACTTAAAGAAGG-CATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAAT 146178 |||| | |||| || ||||||||| ||||||||| | || || |||||||||||||||| Sbjct 10687 ACAATTGGAAGATGGACATTCCACCAGATCAACAACGTCTTATCTTTGCAGGTAAACAAT 10746 Query 146179 TAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAG 146238 | || ||| | || | | ||||||||||| ||||||||| | || | ||||||| Sbjct 10747 TGGAAGATGGACGTACCCTTTCTGATTATAATATCCAAAAAGAAGCAACCTTACATTTAG 10806 Query 146239 TATTACGATTA---AGAGGAGGTAAA 146261 || | || ||| ||||||||||| Sbjct 10807 TACTTCGTTTACGTGGAGGAGGTAAA 10832 >seq2305 Length=8964 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146049 ACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTA 146108 ||||| || || ||||| || || |||||||||||| ||||||||| |||| || Sbjct 1336 ACATTGACTGGGAAAACCATCACGCTTGATGTAGAACCGTCTGATACTATTGAAAACGTT 1395 Query 146109 AAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCA 146168 ||| | ||||||||| ||||||||| || ||||| ||||||||| | | || |||||| Sbjct 1396 AAACAAAAAATACAAGATAAAGAAGGTATCCCACCAGATCAACAACGTTTGATATTTGCA 1455 Query 146169 GGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACT 146228 || |||||||| || ||| | || | | || || ||||| ||||||||| | || Sbjct 1456 GGCAAACAATTGGAAGATGGGCGTACACTTAGTGACTACAATATTCAAAAAGAAGCAACA 1515 Query 146229 ATCCATTTAGTATTACGATTAAGAGGAGG 146257 | |||||||| ||| ||||| | || || Sbjct 1516 TTGCATTTAGTTTTAAGATTACGTGGTGG 1544 >seq734 Length=33368 Score = 136 bits (150), Expect = 6e-27 Identities = 166/223 (74%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 146037 ATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACAT-AAC-GATA 146094 ||||| ||||||| || || || ||||| || ||| || ||| | | ||| |||| Sbjct 10321 ATATTTGTAAAAACCTTGACTGGTAAAACCATCACTCTTTTTGTTC--CTTCAACAGATA 10378 Query 146095 CTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAA 146154 | ||| ||||| |||| ||||||||| ||||||||| |||||||| ||||||||| Sbjct 10379 CAATTGAAAATACAAAATTAAAAATACAAGATAAAGAAGGTATTCCACCAGATCAACAAC 10438 Query 146155 GACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATAC 146214 | | || ||||||||||| ||| |||| ||| | | || ||| | ||||||||||||| Sbjct 10439 GTTTGATATTTGCAGGTAAGCAACTAGAAGATGGTCGTACATTATCCGATTATAATATAC 10498 Query 146215 AAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || | ||| | | |||||||||||||| || | ||||| Sbjct 10499 AAGAGGAAGCCGTATTGCATTTAGTATTACGTTTGCGTGGAGG 10541 >seq1282 Length=23488 Score = 132 bits (146), Expect = 8e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||| | || | ||||| || || || |||||||| ||| | || ||| ||| || | Sbjct 1074 TGCAATTCTTTGTTAAAACGTTGACTGGTAAAACAATCACTTTGGACGTATTACAAAATG 1133 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||| | |||||||| || || ||| |||||||| |||||| ||||||| Sbjct 1134 AATTGATTGCAGATGTAAAATTAAAGATTCAAAAGAAAGAAGGATGTCCACCAGATCAAC 1193 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | |||||||||||| | ||||| || |||| | || ||| | ||||| || | Sbjct 1194 AACGAATTATTTTTGCAGGTTATCAATTGGAAGATACGCGTACATTATCCGATTACAACA 1253 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||| | || ||||||||||||||||| | | ||||| Sbjct 1254 TTCAAAAAGAAGCTACCGTCCATTTAGTATTACGACTTCGTGGAGG 1299 >seq4707 Length=625 Score = 100 bits (110), Expect = 4e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 |||||||| ||||| || ||||||||| | || || ||||| ||||||||||| || ||| Sbjct 272 AAAGAAGGAATTCCTCCAGATCAACAACGTCTTATCTTTGCTGGTAAACAATTGGAAGAT 331 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 | || | | ||||||||||| ||||||||| | || | ||||||||||| || Sbjct 332 GGACGTACTCTTTCTGATTATAATATCCAAAAAGAAGCAACCCTTCATTTAGTATTGCGT 391 Query 146247 TTAAGAGGAGGTA 146259 ||| | || |||| Sbjct 392 TTACGTGGTGGTA 404 >seq4160 Length=5066 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 ||||| ||||| || ||||| || ||| |||||||||||| ||||| ||| |||| Sbjct 882 AAAACTTTAACTGGTAAAACCATCACTCTTGATGTAGAACCATCTGATACAATTGCAAAT 941 Query 146106 GTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTT 146165 ||||| | ||||||||| ||||||||| || || || | ||||||| | | || | | Sbjct 942 ATAAAACAAAAAATACAAGATAAAGAAGGTATCCCTCCAGGTCAACAACGTTTGATATAT 1001 Query 146166 GCAGGTAAACAATTAGATGATAATAGAA---CGTTAACAGATT--ATAATATACAAAAAG 146220 || || |||||| || ||| | ||| || ||| || | ||| ||| | || | Sbjct 1002 GCGGGACTACAATTGGAAGAT--TGGAAGTGCG-TAAGTGAATGCATATTAT--ATAAGG 1056 Query 146221 AATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || || |||||||||||||| || | ||||| Sbjct 1057 AACAAACGATACATTTAGTATTACGTTTGCGCGGAGG 1093 >seq619 Length=74796 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| |||| || | ||| ||||| |||||||||| | | Sbjct 48352 TGCAAATCTTCGTCAAAACGTTAAATGGGACAACCATTACGGTTGATGTAGACCCATCTG 48411 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| | || ||||| | || ||| || |||| | || || || ||| Sbjct 48412 ATACGGTGGAAGCCTTAAAAGCTGCCATCCAAGATAGGCAAGGTGTACCGCCAAATAAAC 48471 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||||| ||||||||||||||| || || | | || | |||| || Sbjct 48472 AACGTTTGATTTTTGGAGGTAAACAATTAGACAATGATCGCCCATTGTCTTATTACAACG 48531 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 | || ||||||||||| | |||||||||||||| | |||| ||| Sbjct 48532 TCCAGAAAGAATCGACGTTGCATTTAGTATTACGTCTTCGAGGTGGT 48578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786076521526320