Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2305 132 4e-26 seq810 125 6e-24 seq4160 123 2e-23 seq775 114 1e-20 seq6389 107 1e-18 seq4707 100 2e-16 seq3001 100 2e-16 >seq2305 Length=8964 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || ||||| | || | |||||||||||| || || || || || || ||| || Sbjct 1526 ACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCATCTTCC 1467 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | ||||||||| ||| ||||||| | ||| ||||| || || ||||| ||||| |||||| Sbjct 1466 AATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTGT 1407 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||||||||| || |||| | ||| ||||| ||||||| ||||| || || ||||| Sbjct 1406 ATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGTTTTC 1347 Query 29758 CCAGTTAAGGT 29768 ||||| || || Sbjct 1346 CCAGTCAATGT 1336 >seq810 Length=26514 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| | || ||||| | || | ||||||||| ||||| || || | Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||| || ||| | || | | ||| ||||| || ||| Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | |||||||| || |||| | ||| ||||| ||||||| Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || ||||| ||||| || ||||| || || || ||||| Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq4160 Length=5066 Score = 123 bits (136), Expect = 2e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 |||| || | |||| || ||||||||||| | ||| ||| | || || ||||| |||| Sbjct 1023 AATCTTCCAATTGTAGTCCCGCATATATCAAACGTTGTTGACCTGGAGGGATACCTTCTT 964 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 | ||||||| ||||||||| | | || | | || ||||| ||||||| |||||||| | Sbjct 963 TATCTTGTATTTTTTGTTTTATATTTGCAATTGTATCAGATGGTTCTACATCAAGAGTGA 904 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAA 29777 | ||||| |||||||| ||||||||||| Sbjct 903 TGGTTTTACCAGTTAAAGTTTTAACAAA 876 >seq775 Length=28483 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || ||| | || | | ||| ||||| || ||||| || ||||| Sbjct 10619 ATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 10560 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||||||| || |||| | ||| ||||| ||||||| |||||||| || Sbjct 10559 GTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTGAT 10500 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || ||||| || || || ||||| Sbjct 10499 GGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq6389 Length=961 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||||| || ||||| | ||| |||||||||||||| |||||||| || | || || Sbjct 22 AAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGT 81 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | |||||| || || ||||||||| ||| || || || ||||| || ||| Sbjct 82 CCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCT 141 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || ||||| | |||||||| ||| | || || ||| || ||||| Sbjct 142 TTATCTTGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGTATCTAGAGTA 201 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || ||||| |||||||| ||||| ||| Sbjct 202 ATTGTTTTTCCAGTTAAAGTTTTTACA 228 >seq4707 Length=625 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||||| || |||||||| || | ||||||||| || |||||||| | || || || Sbjct 393 AAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAGAAAGAGTACGT 334 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | |||||| |||||| | || | | ||| ||||| || ||||| || ||| Sbjct 333 CCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAGGAATTCCTTCT 274 Query 29689 TTGTCTTGTAATTTTTGTTTGAC 29711 |||||||| | ||||| ||||| Sbjct 273 TTGTCTTGGATCTTTTGCTTGAC 251 >seq3001 Length=6688 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 29595 TTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATA 29654 |||||||| ||| || ||||| | | |||| || ||| || | |||||| |||||| Sbjct 4433 TTCTTTTTCAATATTGTAATCAGACAAAGTGCAAGTATCTTCCAATTGTTTCCCAGCAAG 4374 Query 29655 TATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGT 29714 || || |||| ||| || | ||||| ||||| ||||| | | | || || ||| | Sbjct 4373 GATTAAAATTTGTTGACTTGGAGCGATACCTTCTTTTTCTTGAATTCTCTGCTTAACATT 4314 Query 29715 TTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAAC 29774 ||| ||||||||||| | | || || | || | || ||||| |||| ||||||| Sbjct 4313 TTCAACAGTGTCAGACGCTACCACATCCAAGGTGGTCGTCTTGCCTCTTAAATTTTTAAC 4254 Query 29775 AAATATCTGCATTTT 29789 ||| |||||||| || Sbjct 4253 AAAAATCTGCATCTT 4239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385176260819586