Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq888 419 3e-112 >seq888 Length=1579 Score = 419 bits (464), Expect = 3e-112 Identities = 513/700 (73%), Gaps = 0/700 (0%) Strand=Plus/Minus Query 179261 TAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTATCCGTCCTTACA 179320 |||| ||||| ||||||||||| |||||| | |||||| | || ||||| |||| Sbjct 1577 TAATCGGATTTATGCTTCGTCAATTTGAAATTGCACGTGCAGTACAAATTCGTCCGTACA 1518 Query 179321 ATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTTCTCATCTACCCAC 179380 | || ||||| || | | ||||||||| |||||||| |||||| || || ||||||| Sbjct 1517 ACGCAATTGCGTTCTCAGCTCCTATTGCTGTATTCGTATCTGTATTCCTTATTTACCCAC 1458 Query 179381 TTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCC 179440 ||||||| || | ||||||||||| || || || ||||| || | || || | || Sbjct 1457 TTGGACAGTCAGGATGGTTCTTTGCACCTTCATTCGGTGTAGCTGGAATTTTCCGTTTTA 1398 Query 179441 TACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTG 179500 | |||||||| ||||| ||||||||||||||||| |||| || ||||||||||| || | Sbjct 1397 TCCTTTTCTTCCAAGGGTTCCACAACTGGACACTTAACCAATTCCACATGATGGGTGTAG 1338 Query 179501 CAGGTATCCTGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACAT 179560 | || | || || | || || || | ||| ||||| || | ||| ||||| || ||| Sbjct 1337 CTGGAGTACTTGGAGCAGCACTTCTTTGTGCAATTCACGGTGCAACAGTAGAAAACACAC 1278 Query 179561 TGTATGAAGATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGG 179620 | | |||||||| || |||||||||| ||||| || | || |||| || | Sbjct 1277 TTTTCGAAGATGGTGATGGTTCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGAAG 1218 Query 179621 AGACCTATTCTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTA 179680 |||| || || ||||| ||||| |||||||| ||||| ||||| ||||| || | || Sbjct 1217 AGACTTACTCAATGGTAACAGCTAACCGTTTCTGGTCACAGATTTTCGGTGTAGCATTCT 1158 Query 179681 GCAATAAGCGTTGGTTCCACTTCTTTAAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCT 179740 || ||||||||| | |||||||| | ||| || || ||||| | || | ||| | | Sbjct 1157 CAAACAAGCGTTGGCTTCACTTCTTCATGCTTTTCGTACCTGTAACAGGATTATGGATGT 1098 Query 179741 CTTCTATTGGCATCATTGGGCTAGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAG 179800 | | |||| | |||| |||| ||| || ||||| || ||||| || |||| Sbjct 1097 CAGCACTTGGTGTTGTTGGATTAGCATGTAACCTCCGTGCATACGATTTCGTATCGCAAG 1038 Query 179801 AGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTATACAAAGAACATTCTTCTGA 179860 ||||| | || || |||||||||||||| || || ||||| |||||||| |||||||| | Sbjct 1037 AGATCCGTGCTGCTGAAGATCCTGAGTTTGAAACATTCTACACAAAGAATATTCTTCTTA 978 Query 179861 ATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCACATGAAAACTTCATCTTCC 179920 | ||||| | ||||| ||| ||||| || ||||| |||||||||||| | | |||| Sbjct 977 ACGAAGGTATTCGTGCATGGATGGCAGCTCAAGATCAGCCACATGAAAACCTTGTATTCC 918 Query 179921 CAGAAGAAGTCCTACCTAGTGGTAACGCACTGTGATTCAA 179960 | || || || || || |||| ||||| || | |||||| Sbjct 917 CTGAGGAGGTACTTCCACGTGGAAACGCTCTTTAATTCAA 878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605597957097360