Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq683 145 2e-29 >seq683 Length=40655 Score = 145 bits (160), Expect = 2e-29 Identities = 214/300 (71%), Gaps = 6/300 (2%) Strand=Plus/Minus Query 188779 GGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTA 188838 |||||||||||| | || ||||| | | ||| |||||||||| | ||| | |||| Sbjct 39454 GGCCCTACTGGTACTGGCAAAACGCTGATGGCTAAAACATTGGCAAAAATGGCAAATGTT 39395 Query 188839 CCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTG 188898 || | | || | |||||||| || |||||| ||||||| ||||| || ||||||||| Sbjct 39394 CCATTGGTCATTGCAGATGCAACATCATTAACACAAGCTGGATATGTTGGGGAAGATGTG 39335 Query 188899 GAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGT 188958 ||| | ||| | ||| | |||| ||||||| | ||| | | | ||| || | Sbjct 39334 GAATCTATTTTGTATAAATTATTGCAAGAAGCTGATCAAGATGTAGCAAAAGCAGAGCAA 39275 Query 188959 GGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCA-- 189016 || ||||| || ||||||||| | |||||||||| |||| | ||| | | | Sbjct 39274 GGTATTGTGTACATCGATGAAATTGATAAAATTG---GAAAGCGTGGAAGAAGTGCTAAT 39218 Query 189017 TTA-CCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGT 189075 ||| | || ||||| ||||| ||||| ||||| ||||| || |||||||| | |||||| Sbjct 39217 TTATCTCGTGATGTGTCTGGAGAAGGTGTACAACAAGCATTGTTAAAAATGTTAGAAGGT 39158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591723854964608