Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq810 150 4e-31 seq775 136 8e-27 seq4707 134 3e-26 seq6389 125 1e-23 seq734 125 1e-23 seq2305 120 6e-22 seq3001 118 2e-21 seq1282 118 2e-21 >seq810 Length=26514 Score = 150 bits (166), Expect = 4e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| | ||||| || | ||| | |||||| || || || || ||| Sbjct 7742 CCTCCACGAAGACGTAATACTAAATGTAAAGTTGCTTCTTTTTGGATGTTGTAGTCACTA 7683 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | |||||| || |||||||| || | |||||||||||| || Sbjct 7682 AGTGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGA 7623 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || |||||||||||| |||||| |||||||| |||||| |||||||| Sbjct 7622 ATTCCTTCTTTGTCTTGAATCTTTTGTTTTACGTTTTCAATAGTATCAGATGGTTCTACA 7563 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816 || | || || || || || ||||| || ||||| || || ||||| || || Sbjct 7562 TCAAGGGTGATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCATGATGAT 7510 >seq775 Length=28483 Score = 136 bits (150), Expect = 8e-27 Identities = 128/163 (79%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| | |||||| || |||||||| || | |||||||||||| || |||||||| Sbjct 10621 CCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCT 10562 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||| |||||| ||| || |||||||| |||||| |||||||| || | ||| Sbjct 10561 TTGTCTTGGATCTTTTGTTTAACGTTTTCAATAGTATCAGATGGTTCTACATCAAGAGTG 10502 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || || || || ||||| || ||||| || || ||||| |||| Sbjct 10501 ATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCATGATTA 10459 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 82579 ACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAAT 82638 |||| ||||| | ||||| || ||||| || | || | |||||| || |||||||||| Sbjct 10829 ACCT-CCTCCACGTAAACGAAGTACTAAATGTAAGGTTGCTTCTTTTTGGATATTATAAT 10771 Query 82639 CAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTG 82698 |||| || | | || ||||| | |||||| || |||||||| || | ||||||||||| Sbjct 10770 CAGAAAGGGTACGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTG 10711 Query 82699 GAGGTAT 82705 | || || Sbjct 10710 GTGGAAT 10704 >seq4707 Length=625 Score = 134 bits (148), Expect = 3e-26 Identities = 121/151 (80%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||||||| ||||| || || || | |||||| || ||||||||||||| Sbjct 404 TACCACCACGTAAACGCAATACTAAATGAAGGGTTGCTTCTTTTTGGATATTATAATCAG 345 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| | |||||| ||||||||||| || | |||||||||||||| Sbjct 344 AAAGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAG 285 Query 82702 GTATTCCTTCCTTATCTTGAATC-TTTGCTT 82731 | |||||||| || ||||| ||| ||||||| Sbjct 284 GAATTCCTTCTTTGTCTTGGATCTTTTGCTT 254 >seq6389 Length=961 Score = 125 bits (138), Expect = 1e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 ||||||| |||||| |||| ||||||||||| || ||||||||||||| || | | Sbjct 22 AAACGCAAAACTAAATGCAACGTAGATTCTTTTTGAATATTATAATCAGCTAATGTACGT 81 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||||| |||||| || || || || | || |||||| ||||| || || ||||| Sbjct 82 CCATCTTCTAATTGTTTACCTGCGAATATCAATCGTTGTTGGTCTGGTGGAATCCCTTCT 141 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| |||||| ||| ||| ||| ||||| | | ||| || | ||| Sbjct 142 TTATCTTGGATCTTTTGTTTCACACGCGAAATGGTATCGCTTGCCTCTGTATCTAGAGTA 201 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACA 82799 || || || || || || || |||||| Sbjct 202 ATTGTTTTTCCAGTTAAAGTTTTTACA 228 >seq734 Length=33368 Score = 125 bits (138), Expect = 1e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | |||||| | ||||| |||| | ||| | |||||||||||||| ||| Sbjct 10541 CCTCCACGCAAACGTAATACTAAATGCAATACGGCTTCCTCTTGTATATTATAATCGGAT 10482 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||||||||| || || ||||| || | | |||||||||||| || Sbjct 10481 AATGTACGACCATCTTCTAGTTGCTTACCTGCAAATATCAAACGTTGTTGATCTGGTGGA 10422 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| |||||||| || ||| |||| ||||||||| ||||| | | || Sbjct 10421 ATACCTTCTTTATCTTGTATTTTTAATTTTGTATTTTCAATTGTATCTGTTGAAGGAACA 10362 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 | ||| || || || || ||||| || |||||||||||| Sbjct 10361 AAAAGAGTGATGGTTTTACCAGTCAAGGTTTTTACAAATATC 10320 >seq2305 Length=8964 Score = 120 bits (132), Expect = 6e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 82601 AACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTC 82660 |||||| |||| || | |||||| || ||||| || ||| || | | || ||||| Sbjct 1527 AACTAAATGCAATGTTGCTTCTTTTTGAATATTGTAGTCACTAAGTGTACGCCCATCTTC 1468 Query 82661 TAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTG 82720 | |||||| || ||||| || | | |||||||||||| || || ||||| |||||||| Sbjct 1467 CAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTATCTTG 1408 Query 82721 AATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTT 82780 || ||| ||| || |||||||| |||||| |||||||| || | || || || || Sbjct 1407 TATTTTTTGTTTAACGTTTTCAATAGTATCAGACGGTTCTACATCAAGCGTGATGGTTTT 1348 Query 82781 GCCTGTCAACGTCT 82794 || ||||| |||| Sbjct 1347 CCCAGTCAATGTCT 1334 >seq3001 Length=6688 Score = 118 bits (130), Expect = 2e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 82619 TTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 82678 |||||| | ||||| |||||||| | | | | | ||||| | |||||| ||||||| Sbjct 4433 TTCTTTTTCAATATTGTAATCAGACAAAGTGCAAGTATCTTCCAATTGTTTCCCAGCAAG 4374 Query 82679 GATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAAT-CTTTGCTTTTACAT 82737 ||||| |||||||| ||||| || ||||| || |||||||| || ||||| |||| Sbjct 4373 GATTAAAATTTGTTGACTTGGAGCGATACCTTCTTTTTCTTGAATTCTCTGCTTA-ACAT 4315 Query 82738 TTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTA 82797 |||||| || ||| | | | || ||||| || ||||||||||| | || | || | Sbjct 4314 TTTCAACAGTGTCAGACGCTACCACATCCAAGGTGGTCGTCTTGCCTCTTAAATTTTTAA 4255 Query 82798 CAAATATCTGCATTATTAT 82816 |||| |||||||| |||| Sbjct 4254 CAAAAATCTGCATCTTTAT 4236 >seq1282 Length=23488 Score = 118 bits (130), Expect = 2e-21 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTAC-CGT--CT 82658 ||||| || | |||| |||||| || || || ||||| |||| | ||| ||| || Sbjct 1281 ACTAAATGGACGGTAGCTTCTTTTTGAATGTTGTAATCGGATAA---TGTACGCGTATCT 1225 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| | || ||||| || | || |||||||||||| || |||||| || | | Sbjct 1224 TCCAATTGATAACCTGCAAAAATAATTCGTTGTTGATCTGGTGGACATCCTTCTTTCTTT 1165 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 ||||||||| |||||||| | ||||| ||||| || ||| |||||||| || || Sbjct 1164 TGAATCTTTAATTTTACATCTGCAATCAATTCATTTTGTAATACGTCCAAAGTGATTGTT 1105 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || |||||||| || ||||| | ||||| Sbjct 1104 TTACCAGTCAACGTTTTAACAAAGAATTGCAT 1073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981712146420494