Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq769 298 1e-75 seq620 174 4e-38 seq654 96.9 8e-15 >seq769 Length=28997 Score = 298 bits (330), Expect = 1e-75 Identities = 604/888 (68%), Gaps = 9/888 (1%) Strand=Plus/Plus Query 110274 ATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCT 110333 ||||||||| ||||||||| |||| || |||||||||||||| || |||||||| Sbjct 12068 ATCGATTATGCTCGTGACTTCTCGTTTGATTACTTTGGTTTCAAAACGCTAGAACGTGCA 12127 Query 110334 TATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTT 110393 ||||| | | ||||| || || ||||| | || ||||| ||| || | |||||| Sbjct 12128 TATTTGTTGAAAATAAATGGTGAAATTGTTGAAAGACCACAACATATGATTATGCGTGTT 12187 Query 110394 GCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGT 110453 || |||||||||| | ||||| | || |||| || ||| | | ||| Sbjct 12188 GCAGTTGGTATTCACAAGGAAGATATCGACAGTGCTATTATCACATACGATTTGATGAGT 12247 Query 110454 AAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAA 110513 |||| || || ||||| || || || | || || || || || | |||| Sbjct 12248 AAAATGATGTTTACCCATGCAACGCCGACATTGTTCAATGCTGGTACCCCACGCCCACAA 12307 Query 110514 TTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCT 110573 ||||| || |||||| | | | ||| || |||||||| |||| ||||||||||||| | Sbjct 12308 TTGGCATCATGCTTTTTGGTTGCAATGAAAGATGATTCCATTGGAGGTATTTATGATACG 12367 Query 110574 CTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCAC-GTTCATGA 110632 | ||| ||| | || |||| | |||| || ||||| ||| | ||||| | Sbjct 12368 TTAAAATCTTGTGCGCAAATCAGTAAATATGCTGGTGGTATTGG-ATTGAGTGTTCACAA 12426 Query 110633 TATTCGCTCAAAAGGAGCAAATATC-GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTC 110691 || || | ||| | ||| || | | || || | | |||| |||| | Sbjct 12427 CATCCGTAGTACTGGAAGTTACATCCGCGGTA-CAAATGGCTCAAGTAATGGAATTGTCC 12485 Query 110692 CAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG---TAAGAGAA 110748 ||||| | ||||| ||||| || || ||| || || | |||||||| ||| |||| Sbjct 12486 CAATGCTGAGAGTATTCAATGATACCGCACGTTACGTAGACCAAGGTGGCGGTAAAAGAA 12545 Query 110749 ATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAAC 110808 | || || |||||||| || | ||||| |||||| | ||| | || || || ||||| | Sbjct 12546 AAGGTTCTTTTGCTATTTACTTGGAACCATGGCATGCTGATGTCTTCGAGTTTTTAGATC 12605 Query 110809 TTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGA 110868 || |||||||| || |||| | | | ||||| ||||| || ||||||||||||| Sbjct 12606 TTAAAAAAAATCATGGTGATGAAAATGCACGTGCACGCGATTTGTTCTATGCAATGTGGA 12665 Query 110869 TTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTC 110928 || |||||||||||||||||||||| |||| | |||| ||| | | | || || Sbjct 12666 TTCCAGATTTATTCATGAAACGTGTACAAGCAGATGGACAATGGACATTGTTTTGCCCAA 12725 Query 110929 ATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAAT 110988 || | | | || | | ||| | || | | || |||| | ||| | ||| Sbjct 12726 ATGTTGCACGTGATTTGCATGAGACGTGGGGTGAGAAATTCGAAGCATTGTACCATCAAT 12785 Query 110989 ATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCC 111048 ||||||||||||||||| | || | | | || |||||| | ||||| |||||| Sbjct 12786 ATGAAAAAGAAGGCAAGGGTTACAGAACCGTACGTGCACAAGAATTATGGTTTAAAATCA 12845 Query 111049 TTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAATCGC 111107 ||||| ||||||||||| || || || || || ||||| |||||| ||| |||||| Sbjct 12846 TTGAAAGTCAAGTTGAAACAGGTACGCCATACATGTTGTACAAAGATGCAT-GTAATCGT 12904 Query 111108 AAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 ||||| |||||| || || ||||| ||||| ||||||||| ||| Sbjct 12905 AAATCCAATCAACAAAACTTGGGAACGATTAAAAGTAGTAATTTATGC 12952 >seq620 Length=67610 Score = 174 bits (192), Expect = 4e-38 Identities = 323/461 (70%), Gaps = 16/461 (3%) Strand=Plus/Plus Query 279872 ATGGATGGTTTGAAACCTTCACAGCGTAA--GATTATATTCAGTTGTTTCAAAAGAAAAT 279929 || ||||| || ||||| ||||||||||| |||||| || ||||||||| | |||| Sbjct 59083 ATTGATGGGTTAAAACCATCACAGCGTAAAGTCTTATATGCA--TGTTTCAAACGTAAAT 59140 Query 279930 TGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATC 279989 | | |||||| ||||| ||| | |||||||||||| |||||| | | || | Sbjct 59141 TAAAATCAGAAATTAAAGTTGCACAGCTGGCAGGTTATGTTAGCGAACATTCTGCGTACC 59200 Query 279990 ATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATT-TTATGGCT 280048 | || |||||| ||| | ||| || | ||| | ||| | || ||||||| | ||||| Sbjct 59201 ACCATGGTGAAATGTCATTGCAAAGTACGATTATGGGTATGGCACAAGATTATGTTGGCT 59260 Query 280049 TCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAATGGA 280108 ||| | || || |||| | ||| ||| |||||||| ||||| | || |||| Sbjct 59261 CCAATAACATTCCAT-TGCTATTTCCATCTGGACAATTTGGAACTCGTTTGCAAGGTGGA 59319 Query 280109 AAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGATATTACAAACAAGTTA 280168 |||||| || |||||| ||||| ||| ||| | || || | |||| || | | Sbjct 59320 AAAGATAGTGCTAGTGCACGTTATATATTTACTAGGCTGCAAGCTGTTAC--ACGTATGA 59377 Query 280169 TTTATCAATT--CTGATAATGCTTCATTAGAGTGGCTA-GAGGATGAT-GGTCTTGCTA- 280223 | |||| | | ||||| || | | ||| || | | || |||||| ||| || || Sbjct 59378 TATATCCAGTGGCTGATGATCCATTATT-GACATACAATGATGATGATGGGTATT--TAG 59434 Query 280224 TTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTTGTTAATGGTGCTCAAGGAA 280283 |||||||| | || | || ||||| || ||| ||||||||||||| | |||| | Sbjct 59435 TTGAACCAGAAATGTACGTGCCGATTATACCAATGGCTCTTGTTAATGGTATTGAAGGGA 59494 Query 280284 TTGGAACAGGTTATTCTACATCTATCCCAATGTACAATCCA 280324 |||| ||||||| || |||||| | ||||||||||||||| Sbjct 59495 TTGGCACAGGTTGGTCAACATCTGTTCCAATGTACAATCCA 59535 >seq654 Length=46791 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||||| ||||| |||| || | |||||| | || ||||| |||| |||||| Sbjct 18168 AGGCATTTAAATGATGGTGATGTTGTATTATTCAATCGTCAGCCATCTTTGCACAAAATG 18227 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTA-TTATCTGGATTGACATTTCGATTAAATGTAAG 305424 ||||| ||||| ||| | | || ||| || |||| | |||||||| || ||| || Sbjct 18228 TCTATCATGGCGCATTATGCAAAGGTACTTGATTGGAGT-ACATTTCGTTTGAATTTAT- 18285 Query 305425 TGCTTGTACGCCT---TATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 | |||||||| || ||||| ||||| ||||| |||||||||||| | || || || Sbjct 18286 --CATGTACGCCACCATACAATGCCGATTTCGATGGGGATGAAATGAATCTTCACGTTCC 18343 Query 305482 TCAATCA 305488 |||||| Sbjct 18344 ACAATCA 18350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186673725567306