Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq810 127 1e-24 seq2305 96.9 2e-15 seq4707 95.1 8e-15 seq619 91.5 1e-13 seq775 87.8 1e-12 seq3001 82.4 5e-11 >seq810 Length=26514 Score = 127 bits (140), Expect = 1e-24 Identities = 162/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGT-GCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTT 33592 |||||| || ||||||| ||| ||| |||||||| |||||||| || ||||| ||| Sbjct 7731 ACGTAATACTAAATGTAAAGTTGCT-TCTTTTTGGATGTTGTAGTCACTAAGTGTACGTC 7673 Query 33593 CGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTT 33652 | || ||||||||||| || ||||| || | ||| || |||||| | || | ||||||| Sbjct 7672 CATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCTTCTT 7613 Query 33653 TGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTG 33711 |||| ||| || ||||| || | || | || || || ||| || |||| ||| Sbjct 7612 TGTCTTGAATCTTTTGTTT-TACGTTTTCAATAGTATCAGATGGTTCTACATCAAGGGTG 7554 Query 33712 ATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||||||| || || |||||||| || || ||||| Sbjct 7553 ATGGTTTTACCAGTCAAAGTTTTTACGAAAATTTGCAT 7516 >seq2305 Length=8964 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGT-GCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||| | || | ||| || ||||| | || ||| |||||||| || ||||| || Sbjct 1544 CCACCACGTAATCTTAAAACTAAATGCAATGTTGCT-TCTTTTTGAATATTGTAGTCACT 1486 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || ||||||||||| || ||||| |||||||| || |||||| | || Sbjct 1485 AAGTGTACGCCCATCTTCCAATTGTTTGCCTGCAAATATCAAACGTTGTTGATCTGGTGG 1426 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||| || ||||| ||||| ||| | || | || || | ||| | Sbjct 1425 GATACCTTCTTTATCTTGTATTTTTTGTTT-AACGTTTTCAATAGTATCAGACGGTTCTA 1367 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGT 33731 | |||| |||||| ||||| || || || || Sbjct 1366 CATCAAGCGTGATGGTTTTCCCAGTCAATGT 1336 >seq4707 Length=625 Score = 95.1 bits (104), Expect = 8e-15 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGT-GCTCTCTTTTTGTATGTTGTAATCGG 33580 |||||| | ||||| || || ||||| || || ||| |||||||| || || ||||| | Sbjct 403 ACCACCACGTAAACGCAATACTAAATGAAGGGTTGCT-TCTTTTTGGATATTATAATCAG 345 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || ||| | || ||||||||||| || ||||| || | ||| || |||||| | | Sbjct 344 AAAGAGTACGTCCATCTTCCAATTGTTTACCAGCAAAGATAAGACGTTGTTGATCTGGAG 285 Query 33641 GCACACCTTCTTTGTC 33656 | | ||||||||||| Sbjct 284 GAATTCCTTCTTTGTC 269 >seq619 Length=74796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||||| | |||||| || ||||| | || ||||| || | |||||||| | Sbjct 48579 CACCACCTCGAAGACGTAATACTAAATGCAACGTCGATTCTTTCTGGACGTTGTAATAAG 48520 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || ||| || | ||| |||||||| || ||||||||||||| || | || | ||| Sbjct 48519 ACAATGGGCGATCATTGTCTAATTGTTTACCTCCAAAAATCAAACGTTGTTTATTTGGCG 48460 Query 33641 GCACACCTT--CTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTC 33698 | ||||||| || | | || || ||| || ||| || || || || Sbjct 48459 GTACACCTTGCCTATCTTGG--ATGGCAGCTTTTAAGGCTTCCACCGTATCAGATGGGTC 48402 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||||||| || ||| | || |||||||||| || ||||| ||||| Sbjct 48401 TACATCAACCGTAATGGTTGTCCCATTTAACGTTTTGACGAAGATTTGCAT 48351 >seq775 Length=28483 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 33589 CGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCT 33648 ||| | || ||||||||||| || ||||| || | ||| || |||||| | || | ||| Sbjct 10624 CGTCCATCTTCCAATTGTTTACCTGCAAAGATAAGACGTTGTTGATCTGGTGGAATTCCT 10565 Query 33649 TCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAAC 33707 |||||||| || || ||||| ||| | || | || || || ||| || |||| Sbjct 10564 TCTTTGTCTTGGATCTTTTGTTT-AACGTTTTCAATAGTATCAGATGGTTCTACATCAAG 10506 Query 33708 CGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| |||||||| || || |||||||| || || ||||| Sbjct 10505 AGTGATGGTTTTACCAGTCAATGTTTTTACGAAAATTTGCAT 10464 >seq3001 Length=6688 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/198 (71%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 33554 TGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGG 33613 |||| ||||||| || |||||||| || | |||| || ||||||||||| || | Sbjct 4436 TGCT-TCTTTTTCAATATTGTAATCAGACAAAGTGCAAGTATCTTCCAATTGTTTCCCAG 4378 Query 33614 CAAAAATCAAACGCTGCTGATCTTGCGGC-ACACCTTCTTTGTCGGCAATTTTCTGTTTC 33672 ||| || ||| || ||| |||| || | ||||||||| || |||| |||| || Sbjct 4377 CAAGGATTAAAATTTGTTGA-CTTGGAGCGATACCTTCTTTTTCTTGAATTCTCTGCTT- 4320 Query 33673 AACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGT 33731 ||||| || || ||||| | | |||| || | ||| |||| || ||| |||| | Sbjct 4319 AACATTTTCAACAGTGTCAGACGCTACCACATCCAAGGTGGTCGTCTTGCCTCTTAAATT 4260 Query 33732 TTTTACAAAGATCTGCAT 33749 ||| ||||| |||||||| Sbjct 4259 TTTAACAAAAATCTGCAT 4242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328667360392320