Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stramenopiles_20sp._20TOSAG23- 2_20[genbank_20GCA_5F900128395.1_202016-12-02] 9,146 sequences; 32,837,229 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq810 96.9 8e-15 seq4707 87.8 4e-12 seq775 84.2 5e-11 >seq810 Length=26514 Score = 96.9 bits (106), Expect = 8e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| | || || ||| ||||| || | ||| Sbjct 7531 AAAACTTTGACTGGTAAAACCATCACCCTTGATGTAGAACCATCTGATACTATTGAAAAC 7590 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||||||||||||| |||||||||||| || || ||| | |||||||| Sbjct 7591 GTAAAACAAAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAACAACGTCTTATCTTT 7650 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 || || || || |||||||||||| | || | || |||||| |||| ||||| Sbjct 7651 GCAGGTAAACAATTGGAAGATGGACGTACACTTAGTGACTACAACATCCAAAAAGA 7706 >seq4707 Length=625 Score = 87.8 bits (96), Expect = 4e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 206241 ATCAG-TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTA 206299 ||||| | ||||||||||| ||||| |||||||||||| || || ||| | |||| Sbjct 246 ATCAGGTCAAGCAAAAGATCCAAGACAAAGAAGGAATTCCTCCAGATCAACAACGTCTTA 305 Query 206300 TCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAG 206359 |||| || || || || |||||||||||| | ||| | | ||||| || |||| |||| Sbjct 306 TCTTTGCTGGTAAACAATTGGAAGATGGACGTACTCTTTCTGATTATAATATCCAAAAAG 365 Query 206360 AGTCTACTCTTCA 206372 | | || ||||| Sbjct 366 AAGCAACCCTTCA 378 >seq775 Length=28483 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| |||||| | || || ||| ||||| || | ||| Sbjct 10479 AAAACATTGACTGGTAAAACCATCACTCTTGATGTAGAACCATCTGATACTATTGAAAAC 10538 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || || |||||||| ||||| |||||||||||| || || ||| | |||||||| Sbjct 10539 GTTAAACAAAAGATCCAAGACAAAGAAGGAATTCCACCAGATCAACAACGTCTTATCTTT 10598 Query 206305 GCCGGAAAGCAGTTGGAAGATGGA 206328 || || || || |||||||||||| Sbjct 10599 GCAGGTAAACAATTGGAAGATGGA 10622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181682310545466